FAPROTAX is a promising tool for predicting ecological relevant functions of bacterial and archaeal taxa derived from 16S rRNA amplicon sequencing. The database was initially developed to predict the function of marine species using standard microbiological references. This study, however, has attempted to access the application of FAPROTAX in soil environments. We hypothesized that FAPROTAX was compatible with terrestrial ecosystems. The potential use of FAPROTAX to assign ecological functions of soil bacteria was investigated using meta-analysis and our newly designed experiments. Soil samples from two major terrestrial ecosystems, including agricultural land and forest, were collected. Bacterial taxonomy was analyzed using Illumina sequencing of the 16S rRNA gene and ecological functions of the soil bacteria were assigned by FAPROTAX. The presence of all functionally assigned OTUs (Operation Taxonomic Units) in soil were manually checked using peer-reviewed articles as well as standard microbiology books. Overall, we showed that sample source was not a predominant factor that limited the application of FAPROTAX, but poor taxonomic identification was. The proportion of assigned taxa between aquatic and non-aquatic ecosystems was not significantly different (p > 0.05). There were strong and significant correlations (σ = 0.90–0.95, p < 0.01) between the number of OTUs assigned to genus or order level and the number of functionally assigned OTUs. After manual verification, we found that more than 97% of the FAPROTAX assigned OTUs have previously been detected and potentially performed functions in agricultural and forest soils. We further provided information regarding taxa capable of N-fixation, P and K solubilization, which are three main important elements in soil systems and can be integrated with FAPROTAX to increase the proportion of functionally assigned OTUs. Consequently, we concluded that FAPROTAX can be used for a fast-functional screening or grouping of 16S derived bacterial data from terrestrial ecosystems and its performance could be enhanced through improving the taxonomic and functional reference databases.

Human-induced biodiversity change impairs ecosystem functions crucial to human well-being. However, the consequences of this change for ecosystem multifunctionality are poorly understood beyond effects of plant species loss, particularly in regions with high biodiversity across trophic levels. Here we adopt a multitrophic perspective to analyze how biodiversity affects multifunctionality in biodiverse subtropical forests. We consider 22 independent measurements of nine ecosystem functions central to energy and nutrient flow across trophic levels. We find that individual functions and multifunctionality are more strongly affected by the diversity of heterotrophs promoting decomposition and nutrient cycling, and by plant functional-trait diversity and composition, than by tree species richness. Moreover, cascading effects of higher trophic-level diversity on functions originating from lower trophic-level processes highlight that multitrophic biodiversity is key to understanding drivers of multifunctionality. A broader perspective on biodiversity-multifunctionality relationships is crucial for sustainable ecosystem management in light of non-random species loss and intensified biotic disturbances under future environmental change.

The influence of clavicipitaceous fungal endophytes on grass decomposition rates has been studied through field and laboratory experiments. However, the effects of endophytes on decomposition rates of non-grass species are unclear. This paper reviews research data related to the effects of fungal endophytes on decomposition rates of three litter types: grass, non-grass leaf litter (including spruce needle litter) and non-grass twigs and wood. We discuss how fungal endophytes are involved in, or regulate decomposition rates and may change lifestyles from fungal endophytes to saprotrophs. Classical morphology and molecular approaches together with digestion enzyme studies provide evidence to suggest that some endophyte species switch their ecological roles and adopt a new life style as saprotrophs. We also explore the main mechanisms that explain how fungal endophytes may decelerate decomposition rates and whether it is directly driven by alkaloids. Further research on the role of fungal endophytes in decomposition rates of both grass and non-grass litter is needed, especially those addressing the direct and indirect mechanisms by which endophytes affect decomposition rates.

Wood-inhabiting fungi have essential roles in the regulation of carbon stocks and nutrient cycling in forest ecosystems. However, knowledge pertaining to wood-inhabiting fungi is only fragmentary and controversial. Here we established a large-scale deadwood experiment with 11 tree species to investigate diversity and tree species preferences of wood-inhabiting fungi using next-generation sequencing. Our results contradict existing knowledge based on sporocarp surveys and challenge current views on their distribution and diversity in temperate forests. Analyzing α-, β- and γ-diversity, we show that diverse fungi colonize deadwood at different spatial scales. Specifically, coniferous species have higher α- and γ-diversity than the majority of analyzed broadleaf species, but two broadleaf species showed the highest β-diversity. Surprisingly, we found nonrandom co-occurrence (P<0.001) and strong tree species preferences of wood-inhabiting fungi, especially in broadleaf trees (P<0.01). Our results indicate that the saprotrophic fungal community is more specific to tree species than previously thought.

Land use change alters biodiversity and soil quality and thus affects ecosystem functions. This study investigated the effects of changes in land use on major soil quality indicators. Soil samples were taken from a depth of 0–10 cm (top soil) under four major land uses (cropland, grassland, area exclosure, eucalyptus plantation) with similar land use change histories for analysis, and soil from a nearby natural forest was used as a reference. Land use change from natural forest to cropland and grassland significantly decreased major soil quality indicators such as soil organic C (SOC), total soil N (TSN), molybdate-reactive bicarbonate-extractable P, and arbuscular mycorrhizal fungi (AMF) spore density, but compared to the cropland, change to area exclosure and eucalyptus plantation significantly improved SOC, TSN and soil aggregate stability (SAS). In addition, we assessed the correlation among indicators and found that SOC, TSN and SAS significantly correlate with many other soil quality indicators. The study highlights that the conversion of natural forest to cropland results in decline of soil quality and aggregate stability. However, compared to cropland, application of area exclosure and afforestation on degraded lands restores soil quality and aggregate stability.