Bökebatur Ahmet Raşit Mendi

Dr. Bökebatur Ahmet Raşit Mendi

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 March 2021 in PLOS ONE
Verified
Journal Article
Open access
PDF file
MGMutlu Gülbay
Mutlu Gülbay
BÖBahadır Orkun Özbay
Bahadır Orkun Özbay
BMBökebatur Ahmet Raşit Mendi
Bökebatur Ahmet Raşit Mendi
ABAliye Baştuğ
Aliye Baştuğ
HBHürrem Bodur
Hürrem Bodur
Purpose: To evaluate the discrimination of parenchymal lesions between COVID-19 and other atypical pneumonia (AP) by using only radiomics features. Methods: In this retrospective study, 301 pneumonic lesions (150 ground-glass opacity [GGO], 52 crazy paving [CP], 99 consolidation) obtained from nonenhanced thorax CT scans of 74 AP (46 male and 28 female; 48.25±13.67 years) and 60 COVID-19 (39 male and 21 female; 48.01±20.38 years) patients were segmented manually by two independent radiologists, and Location, Size, Shape, and First- and Second-order radiomics features were calculated. Results: Multiple parameters showed significant differences between AP and COVID-19-related GGOs and consolidations, although only the Range parameter was significantly different for CPs. Models developed by using the Bayesian information criterion (BIC) for the whole group of GGO and consolidation lesions predicted COVID-19 consolidation and AP GGO lesions with low accuracy (46.1% and 60.8%, respectively). Thus, instead of subjective classification, lesions were reclassified according to their skewness into positive skewness group (PSG, 78 AP and 71 COVID-19 lesions) and negative skewness group (NSG, 56 AP and 44 COVID-19 lesions), and group-specific models were created. The best AUC, accuracy, sensitivity, and specificity were respectively 0.774, 75.8%, 74.6%, and 76.9% among the PSG models and 0.907, 83%, 79.5%, and 85.7% for the NSG models. The best PSG model was also better at predicting NSG lesions smaller than 3 mL. Using an algorithm, 80% of COVID-19 and 81.1% of AP patients were correctly predicted. Conclusion: During periods of increasing AP, radiomics parameters may provide valuable data for the differential diagnosis of COVID-19.

11 May 2023 in Acta Radiologica
Verified
Journal Article
Closed access
BMBökebatur Ahmet Raşit Mendi
Bökebatur Ahmet Raşit Mendi
HBHalitcan Batur
Halitcan Batur
NÇNurdan Çay
Nurdan Çay
BÇBanu Topçu Çakır
Banu Topçu Çakır
Background: The consistency of pituitary adenomas affects the course of surgical treatment. Purpose: To evaluate the diagnostic capabilities of radiomics based on T1-weighted (T1W) and T2-weighted (T2W) magnetic resonance imaging (MRI) in conjunction with two machine-learning (ML) techniques (support vector machine [SVM] and random forest classifier [RFC]) for assessing the consistency of pituitary adenomas. Material and Methods: The institutional database was retrospectively scanned for patients who underwent surgical excision of pituitary adenomas. Surgical notes were accepted as a reference for the adenoma consistency. Radiomics analysis was performed on preoperative coronal 3.0T T1W and T2W images. First- and second-order parameters were calculated. Inter-observer reproducibility was assessed with Spearman's Correlation (ρ) and intra-observer reproducibility was evaluated with the intraclass correlation coefficient (ICC). Least absolute shrinkage and selection operator (LASSO) was used for dimensionality reduction. SVM and RFC were used as ML methods. Results: A total of 52 patients who produced 206 regions of interest (ROIs) were included. Twenty adenomas that produced 88 ROIs had firm consistency. There was both inter-observer and intra-observer reproducibility. Ten parameters that were based on T2W images with high discriminative power and without correlation were chosen by LASSO. The diagnostic performance of SVM and RFC was as follows: sensitivity = 95.580% and 92.950%, specificity = 83.670% and 88.420%, area under the curve = 0.956 and 0.904, respectively. Conclusion: Radiomics analysis based on T2W MRI combined with various ML techniques, such as SVM and RFC, can provide preoperative information regarding pituitary adenoma consistency with high diagnostic accuracy.

1 August 2023 in Current Medical Imaging
Verified
Journal Article
Closed access
PDF file
BMBökebatur Ahmet Raşit Mendi
Bökebatur Ahmet Raşit Mendi
MGMutlu Gülbay
Mutlu Gülbay
Aims: The aim of the study is to demonstrate a non-invasive alternative method to aid the decision making process in the management of adrenal masses. Background: Lipid-poor adenomas constitute 30% of all adrenal adenomas. When discovered incidentally, additional dynamic adrenal examinations are required to differentiate them from an adrenal malignancy or pheochromocytoma. Objective: In this retrospective study, we aimed to discriminate lipid-poor adenomas from other lipidpoor adrenal masses by using radiomics analysis in single contrast phase CT scans. Materials and Methods: A total of 38 histologically proven lipid-poor adenomas (Group 1) and 38 cases of pheochromocytoma or malignant adrenal mass (Group 2) were included in this retrospective study. Lesions were segmented volumetrically by two independent authors, and a total of 63 sizes, shapes, and first- and second-order parameters were calculated. Among these parameters, a logit-fit model was produced by using 6 parameters selected by the LASSO (least absolute shrinkage and selection operator) regression. The model was cross-validated with LOOCV (leave-one-out crossvalidation) and 1000-bootstrap sampling. A random forest model was also generated in order to use all parameters without the risk of multicollinearity. This model was examined with the nested crossvalidation method. Results: Sensitivity, specificity, accuracy and AUC were calculated in test sets as 84.2%, 81.6%, 82.9% and 0.829 in the logit fit model and 91%, 80%, 82.8% and 0.975 in the RF model, respectively. Conclusion: Predictive models based on radiomics analysis using single-phase contrast-enhanced CT can help characterize adrenal lesions.

7 June 2022 in BMC Medical Imaging
Verified
Journal Article
Open access
PDF file
MGMutlu Gülbay
Mutlu Gülbay
ABAliye Bastug
Aliye Bastug
EOERDEM OZKAN
ERDEM OZKAN
BÖBüşra Yüce Öztürk
Büşra Yüce Öztürk
BMBökebatur Ahmet Raşit Mendi
Bökebatur Ahmet Raşit Mendi
HBHürrem Bodur
Hürrem Bodur
Background: The aim of the study was to predict the probability of intensive care unit (ICU) care for inpatient COVID-19 cases using clinical and artificial intelligence segmentation-based volumetric and CT-radiomics parameters on admission. Methods: Twenty-eight clinical/laboratory features, 21 volumetric parameters, and 74 radiomics parameters obtained by deep learning (DL)-based segmentations from CT examinations of 191 severe COVID-19 inpatients admitted between March 2020 and March 2021 were collected. Patients were divided into Group 1 (117 patients discharged from the inpatient service) and Group 2 (74 patients transferred to the ICU), and the differences between the groups were evaluated with the T-test and Mann–Whitney test. The sensitivities and specificities of significantly different parameters were evaluated by ROC analysis. Subsequently, 152 (79.5%) patients were assigned to the training/cross-validation set, and 39 (20.5%) patients were assigned to the test set. Clinical, radiological, and combined logit-fit models were generated by using the Bayesian information criterion from the training set and optimized via tenfold cross-validation. To simultaneously use all of the clinical, volumetric, and radiomics parameters, a random forest model was produced, and this model was trained by using a balanced training set created by adding synthetic data to the existing training/cross-validation set. The results of the models in predicting ICU patients were evaluated with the test set. Results: No parameter individually created a reliable classifier. When the test set was evaluated with the final models, the AUC values were 0.736, 0.708, and 0.794, the specificity values were 79.17%, 79.17%, and 87.50%, the sensitivity values were 66.67%, 60%, and 73.33%, and the F1 values were 0.67, 0.62, and 0.76 for the clinical, radiological, and combined logit-fit models, respectively. The random forest model that was trained with the balanced training/cross-validation set was the most successful model, achieving an AUC of 0.837, specificity of 87.50%, sensitivity of 80%, and F1 value of 0.80 in the test set. Conclusion: By using a machine learning algorithm that was composed of clinical and DL-segmentation-based radiological parameters and that was trained with a balanced data set, COVID-19 patients who may require intensive care could be successfully predicted.

5 February 2026 in Japanese Journal of Radiology
Verified
Journal Article
Open access
PDF file
BMBökebatur Ahmet Raşit Mendi
Bökebatur Ahmet Raşit Mendi
HBHalitcan Batur
Halitcan Batur
NÇNurdan Çay
Nurdan Çay
Purpose: This study aimed to develop and validate machine learning models based on quantitative radiomics parameters extracted from T1-weighted MRI to differentiate enchondromas from atypical cartilaginous tumours (ACTs). Methods: A retrospective cohort comprising 66 patients (35 with histopathologically confirmed enchondroma and 31 with ACT) was included in the study. T1-weighted MRI images were used for 2D segmentation, performed independently by two experienced observers on all visible slices of each lesion. A comprehensive set of 107 radiomics features was extracted from these segmented regions of interest. LASSO regression was applied for dimensionality reduction. Four distinct machine learning algorithms—Support Vector Machine (SVM), Random Forest Classifier (RFC), Extreme Gradient Boosting (XGBoost), and Decision Tree Analysis—were trained and validated using a 70:30 data split. Results: The radiomics features demonstrated high inter- and intra-observer reproducibility. All evaluated machine learning models exhibited strong diagnostic performance, with Area Under the Curve (AUC) values exceeding 0.90. Specifically, SVM achieved an AUC of 0.922 (95% CI 0.893–0.951), RFC yielded an AUC of 0.920 (95% CI 0.881–0.963), and Decision Tree Analysis showed an AUC of 0.949 (95% CI 0.927–0.972). Notably, the XGBoost model achieved the highest diagnostic efficacy, boasting an impressive AUC of 0.987 (95% CI 0.976–0.999), coupled with a sensitivity of 89.35% and a specificity of 96.55%. Conclusion: Our results indicate that the combination of MRI-based radiomics and machine learning algorithms, particularly XGBoost, offers a non-invasive and highly accurate method for distinguishing enchondroma from ACT.

26 September 2022 in Tuberk Toraks
Verified
Journal Article
Closed access
EAEmine Argüder
Emine Argüder
MFMeltem Fidan
Meltem Fidan
HThalil tekdemir
halil tekdemir
BMBökebatur Ahmet Raşit Mendi
Bökebatur Ahmet Raşit Mendi
AFAbdullah Fidan
Abdullah Fidan
AKAYSEGÜL KARALEZLI
AYSEGÜL KARALEZLI
Pneumothorax (PTX) and pneumomediastinum (PM) are frequently encountered in patients with Coronavirus disease 2019 (COVID-19) and complicate the management of these patients. In this study, we aimed to evaluate the risk factors that cause PTX/PM complications in patients hospitalized due to COVID-19 pneumonia and the effects of these complications on the course of the disease. A total of 503 patients with COVID-19 hospitalized in the COVID-19 ward or intensive care unit (ICU) between September 2020 and December 2020 were included in the study. The median age of patients was 65 (min-max, 21-99) years. Of the patients 299 (59.4%) were male and 204 (40.6%) were female. Of the cases, 26 (5.2%) developed PTX or PM. The patients who developed PTX/PM were older than patients who did not [58.5 (min-max, 21-96) vs 65 years (min-max, 22-99), p= 0.029]. The percentage of PTX/PM development was significantly higher in male patients [F/M= 4/22 (2/7.4%) vs 200/277 (98/92.6%), p= 0.007]. Hypertension as a comorbidity was more commonly seen in the group without PTX/PM (p= 0.007). Ground-glass opacity was the most common tomographic finding in both groups, it was significantly higher in those who did not develop PTX/PM (p<0.001). The length of hospital stay was shorter in patients with PTX/PM (p<0.001), but mortality was higher (p= 0.04). PTX/PM were relatively more common in COVID-19 patients. These complications may negatively affect the prognosis of the disease.