Both fungal and bacterial communities in soils play key roles in driving forest ecosystem processes across multiple time scales, but how seasonal changes in environmental factors shape these microbial communities is not well understood. Here, we aimed to evaluate the importance of seasons, elevation, and soil depth in determining soil fungal and bacterial communities, given the influence of climate conditions, soil properties and plant traits. In this study, seasonal patterns of diversity and abundance did not synchronize between fungi and bacteria, where soil fertility explained the diversity and abundance of soil fungi but soil water content explained those of soil bacteria. Model-based clustering showed that seasonal changes in both abundant and rare taxonomic groups were different between soil fungi and bacteria. The cluster represented by ectomycorrhizal genus Lactarius was a dominant group across soil fungal communities and fluctuated seasonally. For soil bacteria, the clusters composed of dominant genera were seasonally stable but varied greatly depending on elevation and soil depth. Seasonally changing clusters of soil bacteria (e.g., Nitrospira and Pelosinus) were not dominant groups and were related to plant phenology. These findings suggest that the contribution of seasonal changes in climate conditions, soil fertility, and plant phenology to microbial communities might be equal to or greater than the effects of spatial heterogeneity of those factors. Our study identifies aboveground–belowground components as key factors explaining how microbial communities change during a year in forest soils at mid-to-high latitudes.

Elevational gradients represent model systems for understanding the relationships between soil microbial communities and environmental factors, but the multiple influences of plant-soil linkages and climate conditions on elevational diversity gradients (EDGs) of soil microbes have never been explored. Here, we examined how climate conditions, plant diversity and soil properties affect EDGs of soil bacteria at different soil depths. Bacterial communities were investigated at four soil depths in 60 vegetation survey plots along elevational gradients in central Japan. In this study, elevational gradients reflected climate conditions, including mean annual temperature and seasonality of temperature and precipitation. Bacterial diversity decreased with elevation in the surface soil, but showed no relationship with elevation in deep soils. The structural equation modeling showed that soil bacterial diversity was directly affected by plant functional diversity, where leaf C:N ratio diversity had stronger effects than soil properties. We found that EDGs of soil bacteria were determined by the degree of indirect effects of climate conditions, via plant functional diversity and soil properties, against the direct effect of climate conditions on bacterial diversity. These findings demonstrate that community assembly of soil microbes is causally linked with climate conditions, plant functional diversity and soil properties, which determine EDGs.

Summary: Unraveling the mechanisms of home‐field advantage (HFA) is essential to gain a complete understanding of litter decomposition processes. However, knowledge of the relationships between HFA effects and microbial communities is lacking. To examine HFA effects on litter decomposition, we identified the microbial communities and conducted a reciprocal transplant experiment, including all possible combinations of soil and litter, between sites at two elevations in cool‐temperate forests. Soil origin, rather than HFA, was an important factor in controlling litter decomposition processes. Microbiome‐wide association analyses identified litter fungi and bacteria specific to the source soil, which completely differed at a low taxonomic level between litter types. The relative abundance of these microbes specific to source soil was positively correlated with litter mass loss. The results indicated that the unique relationships between plant litter and soil microbes through plant–soil linkages drive litter decomposition processes. In the short term, soil disturbances resulting from land‐use changes have the potential to disrupt the effect of soil origin and hinder the advancement of litter decomposition. These findings contribute to an understanding of HFA mechanisms and the impacts of land‐use change on decomposition processes in forest ecosystems.