Wahyu Indra Duwi Fanata

Dr. Wahyu Indra Duwi Fanata

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2012 in The Plant Journal
Verified
Journal Article
Open access
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WFWahyu Indra Duwi Fanata
Wahyu Indra Duwi Fanata
KLKyoung Hwan Lee
Kyoung Hwan Lee
BSBo Hwa Son
Bo Hwa Son
JYJae Yong Yoo
Jae Yong Yoo
Rikno HarmokoRikno Harmoko
Rikno Harmoko
KLKyun Oh Lee
Kyun Oh Lee
Summary: To explore the physiological significance of N‐glycan maturation in the plant Golgi apparatus, gnt1, a mutant with loss of N‐acetylglucosaminyltransferase I (GnTI) function, was isolated in Oryza sativa. gnt1 exhibited complete inhibition of N‐glycan maturation and accumulated high‐mannose N‐glycans. Phenotypic analyses revealed that gnt1 shows defective post‐seedling development and incomplete cell wall biosynthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content. The developmental defects of gnt1 ultimately resulted in early lethality without transition to the reproductive stage. However, callus induced from gnt1 seeds could be maintained for periods, although it exhibited a low proliferation rate, small size, and hypersensitivity to salt stress. Shoot regeneration and dark‐induced leaf senescence assays indicated that the loss of GnTI function results in reduced sensitivity to cytokinin in rice. Reduced expression of A‐type O. sativa response regulators that are rapidly induced by cytokinins in gnt1 confirmed that cytokinin signaling is impaired in the mutant. These results strongly support the proposed involvement of N‐glycan maturation in transport as well as in the function of membrane proteins that are synthesized via the endomembrane system.

1 November 2013 in Journal of Proteomics
Verified
Journal Article
Closed access
WFWahyu Indra Duwi Fanata
Wahyu Indra Duwi Fanata
SLSang Yeol Lee
Sang Yeol Lee
KLKyun Oh Lee
Kyun Oh Lee

1 March 2013 in Molecules and Cells
Verified
Journal Article
Open access
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Rikno HarmokoRikno Harmoko
Rikno Harmoko
WFWahyu Indra Duwi Fanata
Wahyu Indra Duwi Fanata
JYJae Yong Yoo
Jae Yong Yoo
KKKi Seong Ko
Ki Seong Ko
YRYeong Gil Rim
Yeong Gil Rim
KLKyun Oh Lee
Kyun Oh Lee
In plants, transgenes with inverted repeats are used to induce efficient RNA silencing, which is also frequently induced by highly transcribed sense transgenes. RNA silencing induced by sense transgenes is dependent on RNA-dependent RNA polymerase 6 (RDR6), which converts single-stranded (ss) RNA into double-stranded (ds) RNA. By contrast, it has been proposed that RNA silencing induced by self-complementary hairpin RNA (hpRNA) does not require RDR6, because the hpRNA can directly fold back on itself to form dsRNA. However, it is unclear whether RDR6 plays a role in hpRNA-induced RNA silencing by amplifying dsRNA to spread RNA silencing within the plant. To address the efficiency of hpRNA-induced RNA silencing in the presence or absence of RDR6, Wild type (WT, Col-0) and rdr6-11 Arabidopsis thaliana lines expressing green fluorescent protein (GFP) were generated and transformed with a GFP-RNA interference (RNAi) construct. Whereas most GFP-RNAi-transformed WT lines exhibited almost complete silencing of GFP expression in the T1 generation, various levels of GFP expression remained among the GFP-RNAi-transformed rdr6-11 lines. Homozygous expression of GFP-RNAi in the T3 generation was not sufficient to induce complete GFP silencing in several rdr6-11 lines. Our results indicate that RDR6 is required for efficient hpRNA-induced RNA silencing in plants.

1 July 2015 in Journal of Biological Chemistry
Verified
Journal Article
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JYJae Yong Yoo
Jae Yong Yoo
KKKi Seong Ko
Ki Seong Ko
HSHyun-Kyeong Seo
Hyun-Kyeong Seo
SPSeongha Park
Seongha Park
WFWahyu Indra Duwi Fanata
Wahyu Indra Duwi Fanata
KLKyun Oh Lee
Kyun Oh Lee
The most abundant N-glycan in plants is the paucimannosidic N-glycan with core β1,2-xylose and α1,3-fucose residues (Man3XylFuc(GlcNAc)2). Here, we report a mechanism in Arabidopsis thaliana that efficiently produces the largest N-glycan in plants. Genetic and biochemical evidence indicates that the addition of the 6-arm β1,2-GlcNAc residue by N-acetylglucosaminyltransferase II (GnTII) is less effective than additions of the core β1,2-xylose and α1,3-fucose residues by XylT, FucTA, and FucTB in Arabidopsis. Furthermore, analysis of gnt2 mutant and 35S:GnTII transgenic plants shows that the addition of the 6-arm non-reducing GlcNAc residue to the common N-glycan acceptor GlcNAcMan3(GlcNAc)2 inhibits additions of the core β1,2-xylose and α1,3-fucose residues. Our findings indicate that plants limit the rate of the addition of the 6-arm GlcNAc residue to the common N-glycan acceptor as a mechanism to facilitate formation of the prevalent N-glycans with Man3XylFuc(GlcNAc)2 and (GlcNAc)2Man3XylFuc(GlcNAc)2 structures.

1 April 2011 in Biochemical and Biophysical Research Communications
Verified
Journal Article
Closed access
JKJe Hein Kim
Je Hein Kim
IJIn Jung Jung
In Jung Jung
DKDool Yi Kim
Dool Yi Kim
WFWahyu Indra Duwi Fanata
Wahyu Indra Duwi Fanata
BSBo Hwa Son
Bo Hwa Son
KLKyun Oh Lee
Kyun Oh Lee

26 December 2019 in Journal of Crop Science and Biotechnology
Verified
Journal Article
Closed access
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AMAnisa Maharani
Anisa Maharani
WFWahyu Indra Duwi Fanata
Wahyu Indra Duwi Fanata
FLFaida Nur Laeli
Faida Nur Laeli
Kyung-Min KimKyung-Min Kim
Kyung-Min Kim
THTri Handoyo
Tri Handoyo