Powdery mildew is an economic threat for viticulture because it not only affects grape yield, but also causes a series of impacts on the qualities of fruit and wine, especially the flavors and various metabolites. Different grape varieties may have different levels of powdery mildew resistance/tolerance and their components of their metabolome are also various. In this study, two wine grape varieties, Guipu No.6 (GP6) and Marselan (Mar) with different levels of powdery mildew tolerance, were used to compare the quality differences in metabolism level by using the widely targeted metabolomics method. The results show that GP6 has a better powdery mildew leaf tolerance than Mar. A total of 774 metabolites were detected by using a UPLC-QQQ-MS-based metabolomics approach, and 57 differential metabolites were identified as key metabolites that were accumulated after infection with powdery mildew in GP6 and Mar, including phenolic acids, flavonoids, terpenoids, stilbenes, lipids, nucleotides and derivatives, lignans and coumarins, and quinones. This finding indicates that the defense mechanisms of grape fruit are mainly associated with phenylpropane-flavonoid metabolism. Specifically, stilbenes had greater variations after powdery mildew infection in GP6; while in Mar, the variations of flavonoids, especially kaempferol-3-O-glucuronide and luteolin-7-O-glucuronide, were more remarkable. The above results demonstrate that stilbenes may play a more important role than flavonoids in resisting powdery mildew infection in GP6’s fruits, and the drastic variations of these phenolic compounds in different wine grapes after powdery mildew infection might also lead to quality difference in the flavors. This study can provide new insights into the understanding of the cause of powdery mildew tolerance in different grape varieties and the effects on the quality of wine grapes infected with the disease exerted by metabolism level.

The establishment and application of a two-crop-a-year cultivation system depends on the particularity of climatic conditions in subtropical regions. The different temperature, light, and water conditions throughout the growing season of summer and winter grapes are the fundamental reasons for differences in primary and secondary metabolites. We performed ultra-high-performance liquid chromatography–triple quadrupole mass spectrometry (UPLC-QQQ-MS)-based metabolomics on ‘Kyoho’ grapes under a two-crop-a-year cultivation system. In total, 1062 metabolites were identified and classified into 10 different categories, while flavonoids were the largest group, with 285 metabolites. Moreover, 876 metabolites were different among the four developmental stages, and 551 were different between the summer and winter grapes during the same growth period. Hierarchical clustering analysis (HCA) and principal component analysis (PCA) clearly distinguished developmental and growth-season differences based on the detected metabolites. Of note, flavonoids were the most important compounds responsible for the differences in berry composition during the growth and developmental seasons. The content of most flavonoids was higher in the winter grapes, but some were also found at higher levels in summer grapes, such as kaempferol-4′-O-glucoside, leucocyanidin, and cyanidin-3-O-glucosylglucoside. Additionally, myricetin-3-O-arabinoside was consistently higher in winter grapes than in summer grapes during all four developmental stages. The extreme high temperature and higher relative humidity were important reasons for the lower flavonoid content in the summer grapes than in the winter grapes. Moreover, the stronger light intensity in the early development of the winter grapes had a positive effect on the accumulation of flavonoids, especially flavonols and flavan-3-ols. This study provides new insights into the metabolism of flavonoids in grapes under a two-crop-a-year cultivation system and explores the climatic causes of the differences in the metabolites in the two crops of grapes.

Flavonoids play an important role in forming wine grapes and wine quality characteristics. The flavonoids of three winter red wine grapes, Yeniang No. 2 (YN2), Marselan (Mar), and Guipu No. 6 (GP6), were analyzed by ultra-high-performance liquid chromatography–triple quadrupole mass spectrometry (UPLC-QQQ-MS). Furthermore, the flavonoids in GP6 grapevines using two types of training systems, namely, trellis (T) and espaliers (E), were also compared in this study. Overall, 196 flavonoid metabolites, including 96 flavones, 38 flavonols, 19 flavanones, 18 polyphenols, 15 anthocyanins, 7 isoflavones, and 3 proanthocyanidins, were identified. The flavonoid profiles were remarkably different among these three grape varieties, while they did not change much in the GP6 managed on trellis and espaliers. Grape varieties with different genetic backgrounds have their own unique flavonoid profiles. Compared with Mar-T, isoflavones and flavonols presented higher contents in GP6-T and YN2-T, which mainly contain glycitein, genistin, calycosin, kaempferide, isotrifoliin, and ayanin. The anthocyanin content was significantly higher in YN2-T than in the other two varieties. YN2 and GP6-T present a more stable color, with significantly more acetylated diglucosides and methylated anthocyanins in YN2-T and GP6-T than in Mar-T. Notably, GP6 had more varied flavonoids and the better characteristics to its flavonoid profile out of these three varieties, due to it containing a higher number of anthocyanins, flavone, and flavonols and the greatest number of different flavonoid metabolites (DFMs), with higher contents than YN2 and Mar. Compared with the trellis training system, the espaliers training system increased the content of flavonoids detected in GP6 grape berries; however, the composition of flavonoids strictly depends on the grape variety.

The effects of different rootstocks on the grape quality and volatile aromatic compounds of ‘Shine Muscat’ were investigated. The basic physicochemical parameters of berries from five scion–rootstock combinations (SM-Beta, SM-SO4, SM-5C, SM-Fercal, SM-YN2) and own-rooted ‘Shine Muscat’ grape were measured, and their volatile aromatic compounds were determined using headspace solid-phase microextraction (HS-SPME) combined with gas chromatography–mass spectrometry (GC-MS). Our results showed that the SM-YN2 combination exhibited the highest berry weight, and increased by 28.13% compared with SM self-rooted seedling. In addition, the ‘5C’ and ‘YN2’ rootstocks could better maintain total soluble solids (TSS), titratable acidity (TA), TSS/TA and pH in the berries, whereas the ‘Beta’, ‘SO4’ and ‘Fercal’ rootstocks impaired TSS. Volatile profiling identified 841 volatile compounds classified into 15 categories, among which terpenoids constituted the predominant contributors to berry aroma. Furthermore, 22 characteristic aroma compounds were screened, and linalool presented the highest concentration among all terpenoids in ‘Shine Muscat’ fruit. Odor activity values (OAVs) and aroma proportion analyses further revealed that linalool is the key compound for the characteristic ‘muscat’ aroma of ‘Shine Muscat’. In addition, the SM-YN2 combination exhibited 31.96% and 4.61% higher concentration and proportion of linalool compared to own-rooted vines. Notably, with the exception of ‘YN2’, ‘Beta’, ‘SO4’, ‘5C’ and ’Fercal’ downregulated the expressions of one or more terpenoid synthesis-related genes. In conclusion, grafting onto rootstock could improve berry quality, particularly the ‘YN2’ rootstock, which yielded ‘Shine Muscat’ grapes with the highest overall quality. As a resource of the East Asian grape group, ‘YN2’ can be utilized as a rootstock in future production.

Vitis heyneana Roem. et Schult. var. adenoclada (Hand.-Mazz.) is an important wild grapevine resource with unique berry traits and wine quality characteristics; yet the molecular mechanisms governing its phenolic biosynthesis remain to be further elucidated compared with cultivated Vitis vinifera. This study aimed to systematically characterize the transcriptional and metabolic regulation of phenolic compound accumulation in V. heyneana var. adenoclada using integrated metabolomics and transcriptomics. At the metabolic level, V. heyneana var. adenoclada exhibited significantly higher contents of phenolic acids (caffeic and ferulic acids), resveratrol, flavonols (quercetin and myricetin), flavan-3-ols (catechin and epicatechin), and anthocyanin diglucosides compared with V. vinifera cv. Cabernet Sauvignon. The two tested V. heyneana varieties showed distinct developmental accumulation profiles: Guiheizhenzhu No. 6 accumulated more ferulic acid, resveratrol, myricetin, and anthocyanins at maturity, whereas Yeniang No. 2 showed higher quercetin and flavan-3-ols at the green stage. Integrated multi-omics correlation analyses revealed that the elevated phenolic content is driven by the coordinated upregulation of key structural genes mediated by a complex MYB regulatory network. Specifically, MYB12 (MYBF1) positively correlated with COMT, CHI, DFR, and LAR. MYB5, MYBS3, and MYB61 promoted quercetin synthesis by activating FLS. MYB06, MYB4, and MYB36 enhanced STS transcription to drive resveratrol biosynthesis, whereas MYB1 and MYB5 cooperatively regulated UFGT, 5GT, and GST4, facilitating efficient synthesis and transport of anthocyanin diglucosides. These findings provide comprehensive mechanistic insights into phenolic metabolism in V. heyneana var. adenoclada and establish a valuable theoretical foundation for improving the flavor quality and regional utilization of wild grape wines.