Summary: The tree of life is highly reticulate, with the history of population divergence emerging from populations of gene phylogenies that reflect histories of introgression, lineage sorting and divergence. In this study, we investigate global patterns of oak diversity and test the hypothesis that there are regions of the oak genome that are broadly informative about phylogeny. We utilize fossil data and restriction‐site associatedDNAsequencing (RAD‐seq) for 632 individuals representing nearly 250Quercusspecies to infer a time‐calibrated phylogeny of the world's oaks. We use a reversible‐jump Markov chain Monte Carlo method to reconstruct shifts in lineage diversification rates, accounting for among‐clade sampling biases. We then map the > 20 000RAD‐seq loci back to an annotated oak genome and investigate genomic distribution of introgression and phylogenetic support across the phylogeny. Oak lineages have diversified among geographic regions, followed by ecological divergence within regions, in the Americas and Eurasia. Roughly 60% of oak diversity traces back to four clades that experienced increases in net diversification, probably in response to climatic transitions or ecological opportunity. The strong support for the phylogeny contrasts with high genomic heterogeneity in phylogenetic signal and introgression. Oaks are phylogenomic mosaics, and their diversity may in fact depend on the gene flow that shapes the oak genome.

La Sierra Madre Occidental (SMO) es el complejo montañoso más grande de México, extendiéndose por casi 1200 km desde el noreste de Sonora (30°35' N) hasta el norte de Jalisco (21°00' N). A pesar de su gran importancia ambiental y económica, es todavía deficientemente conocida. Se presenta una sinopsis de los tipos de vegetación, con datos sobre la superficie que ocupan las comunidades reconocidas, intervalos de elevación y climas donde se localizan, así como un mapa. En la zona confluyen tres regiones, albergando ecosistemas templados y semifríos (región Madrense), semiáridos (Madrense-Xerófila) y cálido-secos (Tropical), respectivamente. La región Madrense, en el macizo de la sierra, incluye bosque de pino, bosque mixto de coníferas, bosque de pino-encino, bosque de encino y manchones de bosque mesófilo de montaña, además de comunidades como chaparral (primario y secundario) y vegetación de claros de bosque. La región Madrense-Xerófila, en el piedemonte norte y oriental y estribaciones al oriente de la sierra, presenta bosque bajo abierto (de encino o de pino-encino), matorral perennifolio y zonas de ecotonía hacia pastizal y matorral xerófilo, además de ecotonías con matorral subtropical hacia el sur del Archipiélago Madrense. En la región Tropical, a lo largo de la base occidental de la sierra e ingresando a esta a través de las barrancas y quebradas, predomina bosque tropical caducifolio y matorral subtropical, con pequeñas áreas de bosque tropical subcaducifolio. La alta diversidad de la SMO se ejemplifica con los tres géneros dominantes fisonómicamente en la vegetación: 24 especies de Pinus (46% del total nacional), 54 de Quercus (34%) y 7 de Arbutus (100%).

Hybridization is an important evolutionary force, because interspecific gene transfer can introduce more new genetic material than is directly generated by mutations. Pinus engelmannii Carr. is one of the nine most common pine species in the pine-oak forest ecoregion in the state of Durango, Mexico. This species is widely harvested for lumber and is also used in reforestation programmes. Interspecific hybrids between P.engelmannii and Pinus arizonica Engelm. have been detected by morphological analysis. The presence of hybrids in P. engelmannii seed stands may affect seed quality and reforestation success. Therefore, the goals of this research were to identify introgressive hybridization between P. engelmannii and other pine species in eight seed stands of this species in Durango, Mexico, and to examine how hybrid proportion is related to mean genetic dissimilarity between trees in these stands, using Amplified Fragment Length Polymorphism (AFLP) markers and morphological traits. Differences in the average current annual increment of putative hybrids and pure trees were also tested for statistical significance. Morphological and genetic analyses of 280 adult trees were carried out. Putative hybrids were found in all the seed stands studied. The hybrids did not differ from the pure trees in vigour or robustness. All stands with putative P. engelmannii hybrids detected by both AFLPs and morphological traits showed the highest average values of the Tanimoto distance, which indicates: i) more heterogeneous genetic material, ii) higher genetic variation and therefore iii) the higher evolutionary potential of these stands, and iv) that the morphological differentiation (hybrid/not hybrid) is strongly associated with the Tanimoto distance per stand. We conclude that natural pairwise hybrids are very common in the studied stands. Both morphological and molecular approaches are necessary to confirm the genetic identity of forest reproductive material.

Fruits of wild species of the genus Physalis are consumed as food and calyces and leaves are used in traditional medicine. The phenolic composition of the species of this genus have been scarcely studied. To contribute to a better knowledge for the use of all the potential of these wild species of plants, leaves, fruits, and calyces of five wild species of the genus were analyzed for their phenolic composition and antioxidant properties. Important tissue- and species-dependent variations were found. Calyces of Physalis subulata showed the highest contents of phenolics (176.58 mg of gallic acid equivalents/g dry tissue), flavonoids (39.63 mg/g dry tissue), and phenolic acids (50.57 mg of quercitrin equivalents/g dry tissue), and its leaves displayed the highest total antioxidant capacity (3.59 mg of ascorbic acid equivalents/mL) and one of the highest reduction powers (0.54 µg of ascorbic acid equivalents/mL). A high performance liquid chromatography with photodiode array detection analysis revealed a total of 28 phenolic compounds in foliar tissues (mainly kaempferol-3-O-glycosides), 16 in fruits (mainly phenolic acids), and 16 in calyces (mainly kaempferol-3-O-glycosides); the profiles of these compounds in the three types of tissue were species-specific. The studied species of Physalis are important sources of phenolics with relevant antioxidant activity. The current results indicate that phenolic profiles are valuable specific chemical markers and can be relevant as food tracing and authenticity indicators for plant-based preparations involving species of Physalis.