Gianmaria Bonari

Dr. Gianmaria Bonari

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 July 2020 in Applied Vegetation Science
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MCMilan Chytrý
Milan Chytrý
LTLubomír Tichý
Lubomír Tichý
SHStephan M. Hennekens
Stephan M. Hennekens
IKIlona Knollová
Ilona Knollová
JJJohn A. M. Janssen
John A. M. Janssen
JSJoop H. J. Schaminée
Joop H. J. Schaminée
Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation‐plot records to the habitats of the EUNIS system, use it to classify a European vegetation‐plot database, and compile statistically‐derived characteristic species combinations and distribution maps for these habitats.Location: Europe.Methods: We developed the classification expert system EUNIS‐ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set‐theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species‐to‐habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat.Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man‐made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination.Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert system EUNIS‐ESy. The data provided and the expert system have considerable potential for future use in European nature conservation planning, monitoring and assessment.

11 January 2023 in Journal of Vegetation Science
Verified
Journal Article
Open access
LTLubomír Tichý
Lubomír Tichý
IAIrena Axmanová
Irena Axmanová
JDJürgen Dengler
Jürgen Dengler
RGRiccardo Guarino
Riccardo Guarino
FJFlorian Jansen
Florian Jansen
MCMilan Chytrý
Milan Chytrý
Aims: Ellenberg‐type indicator values are expert‐based rankings of plant species according to their ecological optima on main environmental gradients. Here we extend the indicator‐value system proposed by Heinz Ellenberg and co‐authors for Central Europe by incorporating other systems of Ellenberg‐type indicator values (i.e., those using scales compatible with Ellenberg values) developed for other European regions. Our aim is to create a harmonized data set of Ellenberg‐type indicator values applicable at the European scale.Methods: We collected European data sets of indicator values for vascular plants and selected 13 data sets that used the nine‐, ten‐ or twelve‐degree scales defined by Ellenberg for light, temperature, moisture, reaction, nutrients and salinity. We compared these values with the original Ellenberg values and used those that showed consistent trends in regression slope and coefficient of determination. We calculated the average value for each combination of species and indicator values from these data sets. Based on species’ co‐occurrences in European vegetation plots, we also calculated new values for species that were not assigned an indicator value.Results: We provide a new data set of Ellenberg‐type indicator values for 8908 European vascular plant species (8168 for light, 7400 for temperature, 8030 for moisture, 7282 for reaction, 7193 for nutrients, and 7507 for salinity), of which 398 species have been newly assigned to at least one indicator value.Conclusions: The newly introduced indicator values are compatible with the original Ellenberg values. They can be used for large‐scale studies of the European flora and vegetation or for gap‐filling in regional data sets. The European indicator values and the original and taxonomically harmonized regional data sets of Ellenberg‐type indicator values are available in the Supporting Information and the Zenodo repository.

21 June 2021 in Global Ecology and Biogeography
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Journal Article
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FSFrancesco Maria Sabatini
Francesco Maria Sabatini
JLJonathan Lenoir
Jonathan Lenoir
THTarek Hattab
Tarek Hattab
EAElise Aimee Arnst
Elise Aimee Arnst
MCMilan Chytrý
Milan Chytrý
HBHelge Bruelheide
Helge Bruelheide
Motivation: Assessing biodiversity status and trends in plant communities is critical for understanding, quantifying and predicting the effects of global change on ecosystems. Vegetation plots record the occurrence or abundance of all plant species co‐occurring within delimited local areas. This allows species absences to be inferred, information seldom provided by existing global plant datasets. Although many vegetation plots have been recorded, most are not available to the global research community. A recent initiative, called ‘sPlot’, compiled the first global vegetation plot database, and continues to grow and curate it. The sPlot database, however, is extremely unbalanced spatially and environmentally, and is not open‐access. Here, we address both these issues by (a) resampling the vegetation plots using several environmental variables as sampling strata and (b) securing permission from data holders of 105 local‐to‐regional datasets to openly release data. We thus present sPlotOpen, the largest open‐access dataset of vegetation plots ever released. sPlotOpen can be used to explore global diversity at the plant community level, as ground truth data in remote sensing applications, or as a baseline for biodiversity monitoring.Main types of variable contained: Vegetation plots (n = 95,104) recording cover or abundance of naturally co‐occurring vascular plant species within delimited areas. sPlotOpen contains three partially overlapping resampled datasets (c. 50,000 plots each), to be used as replicates in global analyses. Besides geographical location, date, plot size, biome, elevation, slope, aspect, vegetation type, naturalness, coverage of various vegetation layers, and source dataset, plot‐level data also include community‐weighted means and variances of 18 plant functional traits from the TRY Plant Trait Database.Spatial location and grain: Global, 0.01–40,000 m².Time period and grain: 1888–2015, recording dates.Major taxa and level of measurement: 42,677 vascular plant taxa, plot‐level records.Software format: Three main matrices (.csv), relationally linked.

12 May 2022 in Global Ecology and Biogeography
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Journal Article
Open access
CRCaio Graco Rodrigues Leandro Roza
Caio Graco Rodrigues Leandro Roza
SASonja Aarnio
Sonja Aarnio
NANerea Abrego
Nerea Abrego
AAAlicia T. R. Acosta
Alicia T. R. Acosta
JAJanne Alahuhta
Janne Alahuhta
JSJanne Soininen
Janne Soininen
Aim: Understanding the variation in community composition and species abundances (i.e., β‐diversity) is at the heart of community ecology. A common approach to examine β‐diversity is to evaluate directional variation in community composition by measuring the decay in the similarity among pairs of communities along spatial or environmental distance. We provide the first global synthesis of taxonomic and functional distance decay along spatial and environmental distance by analysing 148 datasets comprising different types of organisms and environments.Location: Global.Time period: 1990 to present.Major taxa studied: From diatoms to mammals.Method: We measured the strength of the decay using ranked Mantel tests (Mantel r) and the rate of distance decay as the slope of an exponential fit using generalized linear models. We used null models to test whether functional similarity decays faster or slower than expected given the taxonomic decay along the spatial and environmental distance. We also unveiled the factors driving the rate of decay across the datasets, including latitude, spatial extent, realm and organismal features.Results: Taxonomic distance decay was stronger than functional distance decay along both spatial and environmental distance. Functional distance decay was random given the taxonomic distance decay. The rate of taxonomic and functional spatial distance decay was fastest in the datasets from mid‐latitudes. Overall, datasets covering larger spatial extents showed a lower rate of decay along spatial distance but a higher rate of decay along environmental distance. Marine ecosystems had the slowest rate of decay along environmental distances.Main conclusions: In general, taxonomic distance decay is a useful tool for biogeographical research because it reflects dispersal‐related factors in addition to species responses to climatic and environmental variables. Moreover, functional distance decay might be a cost‐effective option for investigating community changes in heterogeneous environments.

1 July 2024 in Applied Vegetation Science
Verified
Journal Article
Open access
MCMilan Chytrý
Milan Chytrý
MŘMarcela Řezníčková
Marcela Řezníčková
PNPetr Novotný
Petr Novotný
DHDana Holubová
Dana Holubová
ZPZdenka Preislerová
Zdenka Preislerová
IAIrena Axmanová
Irena Axmanová
This article describes FloraVeg.EU, a new online database with open‐access information on European vegetation units (phytosociological syntaxa), vegetated habitats, and plant taxa. It consists of three modules. (1) The Vegetation module includes 149 phytosociological classes, 378 orders and 1305 alliances of an updated version of the EuroVegChecklist modified based on the decisions of the European Vegetation Classification Committee. Vegetation units dominated by vascular plants are characterized by country‐based distribution maps and data on the dominant life forms, phenology, soil properties, relationships to vegetation regions, elevational vegetation belts and azonal habitats, successional status, and degree of naturalness. A list of diagnostic taxa is also provided for each class. (2) The Habitats module includes vascular‐plant‐dominated terrestrial, freshwater, and marine habitat types from the first to the third or fourth highest hierarchical levels of the EUNIS classification. Of these, 249 vegetated habitats are characterized by a brief description, a point‐based distribution map, diagnostic, constant, and dominant taxa, and a list of the corresponding alliances. (3) The Species module provides information on 37 characteristics of European vascular plant species and some infrageneric or infraspecific taxa, including functional traits (habitus and growth type, leaf, flower, fruit and seed traits, and trophic mode), taxon origin (native vs alien), and ecological information (environmental relationships, Ellenberg‐type indicator values, disturbance indicator values, and relationships to vegetation units and habitat types). Values for at least three variables are available for 36,404 species. Individual taxa, vegetation units, and habitats in these three modules are illustrated by more than 34,000 photographs. The Download section of FloraVeg.EU provides open‐access data sets in a spreadsheet format that can be used for analyses. FloraVeg.EU is a new resource with easily accessible data that can be used for research in vegetation science, ecology, and biogeography, as well as for education and conservation applications.

29 January 2022 in Applied Vegetation Science
Verified
Journal Article
Open access
PDF file
ZPZdenka Preislerová
Zdenka Preislerová
BJBorja Jiménez‐Alfaro
Borja Jiménez‐Alfaro
LMLadislav Mucina
Ladislav Mucina
CBChristian Berg
Christian Berg
GBGianmaria Bonari
Gianmaria Bonari
MCMilan Chytrý
Milan Chytrý
Aim: The first comprehensive checklist of European phytosociological alliances, orders and classes (EuroVegChecklist) was published by Mucina et al. (2016, Applied Vegetation Science, 19 (Suppl. 1), 3–264). However, this checklist did not contain detailed information on the distribution of individual vegetation types. Here we provide the first maps of all alliances in Europe.Location: Europe, Greenland, Canary Islands, Madeira, Azores, Cyprus and the Caucasus countries.Methods: We collected data on the occurrence of phytosociological alliances in European countries and regions from literature and vegetation‐plot databases. We interpreted and complemented these data using the expert knowledge of an international team of vegetation scientists and matched all the previously reported alliance names and concepts with those of the EuroVegChecklist. We then mapped the occurrence of the EuroVegChecklist alliances in 82 territorial units corresponding to countries, large islands, archipelagos and peninsulas. We subdivided the mainland parts of large or biogeographically heterogeneous countries based on the European biogeographical regions. Specialized alliances of coastal habitats were mapped only for the coastal section of each territorial unit.Results: Distribution maps were prepared for 1,105 alliances of vascular‐plant dominated vegetation reported in the EuroVegChecklist. For each territorial unit, three levels of occurrence probability were plotted on the maps: (a) verified occurrence; (b) uncertain occurrence; and (c) absence. The maps of individual alliances were complemented by summary maps of the number of alliances and the alliance–area relationship. Distribution data are also provided in a spreadsheet.Conclusions: The new map series represents the first attempt to characterize the distribution of all vegetation types at the alliance level across Europe. There are still many knowledge gaps, partly due to a lack of data for some regions and partly due to uncertainties in the definition of some alliances. The maps presented here provide a basis for future research aimed at filling these gaps.