Carolina Soekmadji

Dr. Carolina Soekmadji

QIMR Berghofer Medical Research Institute, Brisbane, Australia

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 November 2014 in Bioinformatics
Verified
Journal Article
Open access
PDF file
DKDae-Kyum Kim
Dae-Kyum Kim
JLJaewook Lee
Jaewook Lee
SKSae Rom Kim
Sae Rom Kim
DCDongsic Choi
Dongsic Choi
YYYae Jin Yoon
Yae Jin Yoon
YGYong Song Gho
Yong Song Gho
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging. Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info. Contact:ysgho@postech.ac.kr

15 November 2017 in Journal of Extracellular Vesicles
Verified
Journal Article
Open access
KWKenneth Witwer
Kenneth Witwer
Carolina SoekmadjiCarolina Soekmadji
Carolina Soekmadji
AHAndrew Hill
Andrew Hill
MWMarca Wauben
Marca Wauben
EBEdit I. Buzás
Edit I. Buzás
CTClotilde Théry
Clotilde Théry
(2017). Updating the MISEV minimal requirements for extracellular vesicle studies: building bridges to reproducibility. Journal of Extracellular Vesicles: Vol. 6, No. 1, 1396823.

1 August 2019 in Journal of Extracellular Vesicles
Verified
Journal Article
Open access
ACAled Clayton
Aled Clayton
EBEric Boilard
Eric Boilard
EBEdit Buzas
Edit Buzas
Lesley ChengLesley Cheng
Lesley Cheng
JFJuan Manual Falcón‐Perez
Juan Manual Falcón‐Perez
RNRienk Nieuwland
Rienk Nieuwland
There is an increasing interest in exploring clinically relevant information that is present in body fluids, and extracellular vesicles (EVs) are intrinsic components of body fluids (“liquid biopsies”). In this report, we will focus on blood. Blood contains not only EVs but also cells, and non‐EV particles including lipoproteins. Due to the high concentration of soluble proteins and lipoproteins, blood, plasma and serum have a high viscosity and density, which hampers the concentration, isolation and detection of EVs. Because most if not all studies on EVs are single‐centre studies, their clinical relevance remains limited. Therefore, there is an urgent need to improve standardization and reproducibility of EV research. As a first step, the International Society on Extracellular Vesicles organized a biomarker workshop in Birmingham (UK) in November 2017, and during that workshop several working groups were created to focus on a particular body fluid. This report is the first output of the blood EV work group and is based on responses by work group members to a questionnaire in order to discover the contours of a roadmap. From the answers it is clear that most respondents are in favour of evidence‐based research, education, quality control procedures, and physical models to improve our understanding and comparison of concentration, isolation and detection methods. Since blood is such a complex body fluid, we assume that the outcome of the survey may also be valuable for exploring body fluids other than blood.

1 March 2011 in Biomaterials
Verified
Journal Article
Closed access
STSarmistha Talukdar
Sarmistha Talukdar
MMMahitosh Mandal
Mahitosh Mandal
Dietmar Werner HutmacherDietmar Werner Hutmacher
Dietmar Werner Hutmacher
PRPamela Russell
Pamela Russell
Carolina SoekmadjiCarolina Soekmadji
Carolina Soekmadji
Subhas C. KunduSubhas C. Kundu
Subhas C. Kundu

6 June 2016 in Oncogene
Verified
Journal Article
Closed access
LSLuke Selth
Luke Selth
RDR Das
R Das
STS L Townley
S L Townley
ICI Coutinho
I Coutinho
AHA R Hanson
A R Hanson
WTWayne Tilley
Wayne Tilley

4 September 2020 in Journal of Extracellular Vesicles
Verified
Journal Article
Open access
Carolina SoekmadjiCarolina Soekmadji
Carolina Soekmadji
BLBo Li
Bo Li
YHYiyao Huang
Yiyao Huang
HWHaifang Wang
Haifang Wang
TATaixue An
Taixue An
LZLei Zheng
Lei Zheng
The utilization of extracellular vesicles (EVs) in clinical theranostics has rapidly advanced in the past decade. In November 2018, the International Society for Extracellular Vesicles (ISEV) held a workshop on “EVs in Clinical Theranostic”. Here, we report the conclusions of roundtable discussions on the current advancement in the analysis technologies and we provide some guidelines to researchers in the field to consider the use of EVs in clinical application. The main challenges and the requirements for EV separation and characterization strategies, quality control and clinical investigation were discussed to promote the application of EVs in future clinical studies.