Bacterial communities of the water and the biofilm formed during five years on an artificial substrate in Lake Baikal were studied by the pyrosequencing of 16S rRNA gene fragments; taxonomic diversity of bacterial communities and differences in their structure were revealed. The biofilm community contained mainly representatives of three phyla: Cyanobacteria, Bacteroidetes, and Proteobacteria; the amounts of other groups were within 1%. Bacterial community of the plankton was more heterogeneous; along with the dominant phyla (Bacteroidetes, Actinobacteria, and Proteobacteria) 15% of the members were of the other phyla. The use of pyrosequencing allowed to reveal 35 bacterial phyla in Lake Baikal, some of which were identified for the first time; moreover, minor groups of microorganisms (including only several sequences), which were not earlier determined by other molecular methods were found.

One of the fundamental methods for cultivating bacterial strains is conventional plating on solid media, but this method does not reveal the true dive

The autotrophic picoplankton of Lake Baikal was discovered more than 30 years ago; the productivity of the endemic member of the group, Synechocystis limnetica, is of particular interest. In the course of long-term investigations, the abundance of this species was established using the sedimentation technique. Maximum abundance was reached at 104 cells per ml in summer. In addition to estimating the distribution of this species throughout a defined lake area during the spring-summer period, the character of interrelations with large phytoplankton was revealed. Baikalian autotrophic picoplankton was studied from 1997 to 2000 using epifluorecsence and scanning electron microscopy. The study of seasonal and annual dynamics of picoplankton abundance was conducted monthly at the monitoring station in southern Baikal. The spatial distribution of autotrophic picoplankton was observed in the period when Lake Baikal was free of ice; the lake area was defined by 50 stations. Microscopic examination of planktonic samples revealed that the phycoerythrin-rich cyanobacteria of genus Synechococcus generated the largest biomass of autotrophic picoplankton in Lake Baikal. Morphotype diversity of the representatives of genus Synechecoccus was revealed in the study: Synechococcus spp. of coccoid and ellipsoid forms were dominant by abundance. The coccoid and ellipsoid forms had diameters of 0.9 and 0.7 to 1.3 μm, respectively. The portion of picoplanktonic algae in the Baikalian picoplankton community is not high and does not exceed 10% in the summer time when growth is highest. The autotrophic picoplankton abundance throughout the year in the 0–50 m layer varies by more than one hundred times. Maximal concentration of picocyanobacteria occurs in late July–August at 10 to 25 m depths where it reached 106 cells ml−1. The minimal concentration (103 cells ml−1) was observed in December at the same depths. A small peak of the picoplankton growth occurred in April of each year when the total numbers of picocyanobacteria increased 2 to 4 times after winter. In 1999 the peak rose to 105 cells ml−1 . During the investigation period the highest indices of autotrophic picoplankton numbers were observed in 1999 and the lowest in 1997. The spatial distribution of this group in the whole Baikal aquatorium was characteristically heterogeneous; its abundance varied by 2 to 10 times in different parts of the lake. The largest fluctuation occurred in August and the least in September. The maximum picoplankton abundance was observed in the epilimnion during the periods of thermal stratification. In the course of homothermy a comparably homogeneous distribution of picocyanobacteria was revealed up to 300 m depth, but the highest numbers were found in the upper 30 m layer.