Shuyan Lin

Dr. Shuyan Lin

Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, College of Biology and Environment, Nanjing Forestry University, Nanjing 210037, China
orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 November 2018 in Forests
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Journal Article
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Peijian ShiPeijian Shi
Peijian Shi
DRDavid Ratkowsky
David Ratkowsky
YLYang Li
Yang Li
LZLifang Zhang
Lifang Zhang
SLShuyan Lin
Shuyan Lin
Johan GielisJohan Gielis
Johan Gielis
Plant leaves exhibit diverse shapes that enable them to utilize a light resource maximally. If there were a general parametric model that could be used to calculate leaf area for different leaf shapes, it would help to elucidate the adaptive evolutional link among plants with the same or similar leaf shapes. We propose a simplified version of the original Gielis equation (SGE), which was developed to describe a variety of object shapes ranging from a droplet to an arbitrary polygon. We used this equation to fit the leaf profiles of 53 species (among which, 48 bamboo plants, 5 woody plants, and 10 geographical populations of a woody plant), totaling 3310 leaves. A third parameter (namely, the floating ratio c in leaf length) was introduced to account for the case when the theoretical leaf length deviates from the observed leaf length. For most datasets, the estimates of c were greater than zero but less than 10%, indicating that the leaf length predicted by the SGE was usually smaller than the actual length. However, the predicted leaf areas approximated their actual values after considering the floating ratios in leaf length. For most datasets, the mean percent errors of leaf areas were lower than 6%, except for a pooled dataset with 42 bamboo species. For the elliptical, lanceolate, linear, obovate, and ovate shapes, although the SGE did not fit the leaf edge perfectly, after adjusting the parameter c, there were small deviations of the predicted leaf areas from the actual values. This illustrates that leaves with different shapes might have similar functional features for photosynthesis, since the leaf areas can be described by the same equation. The anisotropy expressed as a difference in leaf shape for some plants might be an adaptive response to enable them to adapt to different habitats.

7 December 2023 in Frontiers in Plant Science
Verified
Journal Article
Open access
ZLZhuo Lv
Zhuo Lv
WZWanqi Zhao
Wanqi Zhao
SKShuxin Kong
Shuxin Kong
LLLong Li
Long Li
SLShuyan Lin
Shuyan Lin
Leaf growth initiates in the peripheral region of the meristem at the apex of the stem, eventually forming flat structures. Leaves are pivotal organs in plants, serving as the primary sites for photosynthesis, respiration, and transpiration. Their development is intricately governed by complex regulatory networks. Leaf development encompasses five processes: the leaf primordium initiation, the leaf polarity establishment, leaf size expansion, shaping of leaf, and leaf senescence. The leaf primordia starts from the side of the growth cone at the apex of the stem. Under the precise regulation of a series of genes, the leaf primordia establishes adaxial-abaxial axes, proximal-distal axes and medio-lateral axes polarity, guides the primordia cells to divide and differentiate in a specific direction, and finally develops into leaves of a certain shape and size. Leaf senescence is a kind of programmed cell death that occurs in plants, and as it is the last stage of leaf development. Each of these processes is meticulously coordinated through the intricate interplay among transcriptional regulatory factors, microRNAs, and plant hormones. This review is dedicated to examining the regulatory influences of major regulatory factors and plant hormones on these five developmental aspects of leaves.

21 January 2020 in Annals of Forest Science
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SLShuyan Lin
Shuyan Lin
KNKarl J. Niklas
Karl J. Niklas
YWYawen Wan
Yawen Wan
DHDirk Hölscher
Dirk Hölscher
CHCang Hui
Cang Hui
Peijian ShiPeijian Shi
Peijian Shi
Key message: A highly significant and positive scaling relationship between bamboo leaf dry mass and leaf surface area was observed; leaf shape (here, represented by the quotient of leaf width and length) had a significant influence on the scaling exponent of leaf dry mass vs. area. Context: The scaling of leaf dry mass vs. leaf area is important for understanding how plants effectively intercept sunlight and invest carbon to do so. However, comparatively few, if any, studies have focused on whether leaf shape influences this scaling relationship. Aims: In order to explore the effects of leaf shape on the scaling relationship between leaf dry mass and area, we examined 101 species, varieties, forms, and cultivars of bamboo growing in China and identified the relationship between the scaling exponent of leaf dry mass vs. area and leaf shape. This taxon was used because its leaf shape is conserved across species and, therefore, easily quantified. Methods: Ten thousand and forty-five leaves from 101 bamboo species, varieties, forms, and cultivars growing in China were collected, and leaf dry mass, the quotient of leaf width and length, leaf area, and leaf dry mass per unit area were measured. The effect of leaf shape that can be easily quantified using the quotient of leaf width and length on the relevant and ecologically important scaling exponents was explored using this data base. Results: Leaf dry mass and area differed significantly across bamboo genera, and even within the same genus. However, a statistically robust log-log linear and positive scaling relationship was observed for mass and area with a 1.115 scaling exponent (95% CI = 1.107, 1.122; r2 = 0.907). Leaf shape had a significant influence on the numerical values of the scaling exponent of leaf dry mass vs. area. When the median of the quotient of leaf width and length was below 0.125, the numerical value of the scaling exponent increased with increasing quotient of leaf width and length. When the median of the quotient of leaf width and length was above 0.125, the scaling exponent numerically decreased toward 1.0. Conclusion: We show, for the first time, that a significant relationship exists between leaf shape and the numerical values of scaling exponents governing the scaling of leaf dry mass with respect to leaf area. In addition, we show that with the quotient of leaf width and length increasing mean LMA increases, which implies a negative correlation between mean LMA and the estimated exponent of leaf dry mass vs. area for the grouped data based on the sorted quotients of leaf width and length.

18 June 2024 in Plants
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ZLZhuo Lv
Zhuo Lv
SJShuaijun Jiang
Shuaijun Jiang
SKShuxin Kong
Shuxin Kong
XZXu Zhang
Xu Zhang
JYJiahui Yue
Jiahui Yue
SLShuyan Lin
Shuyan Lin
“Omics” typically involves exploration of the structure and function of the entire composition of a biological system at a specific level using high-throughput analytical methods to probe and analyze large amounts of data, including genomics, transcriptomics, proteomics, and metabolomics, among other types. Genomics characterizes and quantifies all genes of an organism collectively, studying their interrelationships and their impacts on the organism. However, conventional transcriptomic sequencing techniques target population cells, and their results only reflect the average expression levels of genes in population cells, as they are unable to reveal the gene expression heterogeneity and spatial heterogeneity among individual cells, thus masking the expression specificity between different cells. Single-cell transcriptomic sequencing and spatial transcriptomic sequencing techniques analyze the transcriptome of individual cells in plant or animal tissues, enabling the understanding of each cell’s metabolites and expressed genes. Consequently, statistical analysis of the corresponding tissues can be performed, with the purpose of achieving cell classification, evolutionary growth, and physiological and pathological analyses. This article provides an overview of the research progress in plant single-cell and spatial transcriptomics, as well as their applications and challenges in plants. Furthermore, prospects for the development of single-cell and spatial transcriptomics are proposed.

Verified
Journal Article
Open access
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OCOu Cai
Ou Cai
HZHanjiao Zhang
Hanjiao Zhang
LYLu Yang
Lu Yang
HWHongyu Wu
Hongyu Wu
MQMin Qin
Min Qin
SLShuyan Lin
Shuyan Lin
Phyllostachys nigra has green young culms (S1) and purple black mature culms (S4). Anthocyanins are the principal pigment responsible for color presentation in ornamental plants. We employ a multi-omics approach to investigate the regulatory mechanisms of anthocyanins in Ph. nigra. Firstly, we found that the pigments of the culm of Ph. nigra accumulated only in one to four layers of cells below the epidermis. The levels of total anthocyanins and total flavonoids gradually increased during the process of bamboo culm color formation. Metabolomics analysis indicated that the predominant pigment metabolites observed were petunidin 3-O-glucoside and malvidin O-hexoside, exhibiting a significant increase of up to 9.36-fold and 13.23-fold, respectively, during pigmentation of Ph. nigra culm. Transcriptomics sequencing has revealed that genes involved in flavonoid biosynthesis, phenylpropanoid biosynthesis, and starch and sucrose metabolism pathways were significantly enriched, leading to color formation. A total of 62 differentially expressed structural genes associated with anthocyanin synthesis were identified. Notably, PnANS2, PnUFGT2, PnCHI2, and PnCHS1 showed significant correlations with anthocyanin metabolites. Additionally, certain transcription factors such as PnMYB6 and PnMYB1 showed significant positive or negative correlations with anthocyanins. With the accumulation of sucrose, the expression of PnMYB6 is enhanced, which in turn triggers the expression of anthocyanin biosynthesis genes. Based on these findings, we propose that these key genes primarily regulate the anthocyanin synthesis pathway in the culm and contribute to the accumulation of anthocyanin, ultimately resulting in the purple-black coloration of Ph. nigra.

16 October 2024 in Forests
Verified
Journal Article
Open access
PDF file
HZHanjiao Zhang
Hanjiao Zhang
XZXu Zhang
Xu Zhang
YDYulong DING
Yulong DING
FHFeiyi Huang
Feiyi Huang
ZCZhuo Yu Cai
Zhuo Yu Cai
SLShuyan Lin
Shuyan Lin
With the increasing pollution caused by plastic products, people’s awareness of environmental protection has gradually increased. Based on the advantages of China’s bamboo resources and bamboo industry, the International Network for Bamboo and Rattan launched the ‘Utilizing bamboo as a sustainable alternative to plastic’ initiative in November 2022 to accelerate the implementation of the United Nations 2030 Agenda for Sustainable Development. This initiative provides a nature-based solution for global sustainable development, which will have a profound impact on promoting global green development, industrial science and technology, social services, cultural exchanges, and other fields. It has a huge market capacity and application potential. This study aims to understand the research status, hotspots, development trends, and prospects of this initiative. WoS and China National Knowledge Infrastructure (CNKI) were searched for the relevant literature on ‘utilizing bamboo as a sustainable alternative to plastic bamboo as plastic’ and ‘bamboo resources’ from the establishment of the database to 2024. Bibliometric methods and VOSviewer were used to analyze 1855 literatures with the above two keywords published in the Web of Science core set database from 2000 to 2024. A visual analysis was performed on the number of publications, national research institutions, researchers, number of citations, and research topics of the literature. For example, China, the United States, and India ranked in the top three in terms of the number of articles published, with 1103, 267, and 167, respectively. China had the highest number of citations, reaching 26,607. At the same time, the literature with ‘bamboo’ as the keyword in CNKI was analyzed to understand the species of bamboo currently studied. A literature investigation was carried out around the resource cultivation of the bamboo industry in our country, and it was found that the research on ‘use bamboo as plastic’ and ‘bamboo resources’ had been valued by scholars at home and abroad, and had formed a relatively stable research group. Using scientific and technological innovation to improve the product quality of ‘bamboo instead of plastic’, expanding its application scope and market demand, and realizeing the sustainable industry development of ‘bamboo instead of plastic’ is the current research hotspot and the future development direction.