Leire Legarreta

Dr. Leire Legarreta

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 June 2016 in Monatshefte für Mathematik
Verified
Journal Article
Closed access
PDF file
MRMarco Ruscitti
Marco Ruscitti
LLLeire Legarreta
Leire Legarreta
MYManoj K. Yadav
Manoj K. Yadav

Verified
Journal Article
Open access
PDF file
IMIker Malaina
Iker Malaina
LGLorena Gonzalez-Melero
Lorena Gonzalez-Melero
LMLuis Martínez
Luis Martínez
ASAiala Salvador
Aiala Salvador
ASAna Sanchez-Diez
Ana Sanchez-Diez
MBMaría Dolores Boyano
María Dolores Boyano
In the last few years, the importance of neoantigens in the development of personalized antitumor vaccines has increased remarkably. In order to study whether bioinformatic tools are effective in detecting neoantigens that generate an immune response, DNA samples from patients with cutaneous melanoma in different stages were obtained, resulting in a total of 6048 potential neoantigens gathered. Thereafter, the immunological responses generated by some of those neoantigens ex vivo were tested, using a vaccine designed by a new optimization approach and encapsulated in nanoparticles. Our bioinformatic analysis indicated that no differences were found between the number of neoantigens and that of non-mutated sequences detected as potential binders by IEDB tools. However, those tools were able to highlight neoantigens over non-mutated peptides in HLA-II recognition (p-value 0.03). However, neither HLA-I binding affinity (p-value 0.08) nor Class I immunogenicity values (p-value 0.96) indicated significant differences for the latter parameters. Subsequently, the new vaccine, using aggregative functions and combinatorial optimization, was designed. The six best neoantigens were selected and formulated into two nanoparticles, with which the immune response ex vivo was evaluated, demonstrating a specific activation of the immune response. This study reinforces the use of bioinformatic tools in vaccine development, as their usefulness is proven both in silico and ex vivo.

19 December 2015 in Monatshefte für Mathematik
Verified
Journal Article
Closed access
PDF file
GFGustavo A. Fernández-Alcober
Gustavo A. Fernández-Alcober
LLLeire Legarreta
Leire Legarreta
ATAntonio Tortora
Antonio Tortora
MTMaria Tota
Maria Tota

9 December 2020 in Journal of Group Theory
Verified
Journal Article
Closed access
PDF file
AGAlbert Garreta
Albert Garreta
LLLeire Legarreta
Leire Legarreta
AMAlexei Miasnikov
Alexei Miasnikov
DODenis Ovchinnikov
Denis Ovchinnikov
We study metabelian groups 𝐺 given by full rank finite presentations ⟨A∣R⟩M in the variety ℳ of metabelian groups. We prove that 𝐺 is a product of a free metabelian subgroup of rank max⁡{0,|A|-|R|} and a virtually abelian normal subgroup, and that if |R|≤|A|-2, then the Diophantine problem of 𝐺 is undecidable, while it is decidable if |R|≥|A|. We further prove that if |R|≤|A|-1, then, in any direct decomposition of 𝐺, all factors, except one, are virtually abelian. Since finite presentations have full rank asymptotically almost surely, metabelian groups finitely presented in the variety of metabelian groups satisfy all the aforementioned properties asymptotically almost surely.

20 September 2017 in Axioms
Verified
Journal Article
Open access
PDF file
LLLeire Legarreta
Leire Legarreta
ILInmaculada Lizasoain
Inmaculada Lizasoain
IMIraide Mardones-Pérez
Iraide Mardones-Pérez
Aggregation functions are mathematical operators that merge given data in order to obtain a global value that preserves the information given by the data as much as possible. In most practical applications, this value is expected to be between the infimum and the supremum of the given data, which is guaranteed only when the aggregation functions are idempotent. Ordered weighted averaging (OWA) operators are particular cases of this kind of function, with the particularity that the obtained global value depends on neither the source nor the expert that provides each datum, but only on the set of values. They have been classified by means of the orness—a measurement of the proximity of an OWA operator to the OR-operator. In this paper, the concept of orness is extended to the framework of idempotent aggregation functions defined both on the real unit interval and on a complete lattice with a local finiteness condition.

23 June 2016 in Monatshefte für Mathematik
Verified
Journal Article
Closed access
PDF file
GFGustavo A. Fernández-Alcober
Gustavo A. Fernández-Alcober
LLLeire Legarreta
Leire Legarreta
ATAntonio Tortora
Antonio Tortora
MTMaria Tota
Maria Tota