This experiment aimed to investigate the effects of varying proportions of mixed silage on fermentation quality, microbial diversity, and aerobic stability. The mixed silage samples (G10Y0, G9Y1, G8Y2, G7Y3, G6Y4, G5Y5, G4Y6, G3Y7, G2Y8, G1Y9, and G0Y10) were prepared with a 10% mass ratio of licorice stems and leaves (G) to whole-plant corn (Y) mixed silage. After sealing for 60 days, the cans were opened, and their nutrient content and fermentation quality were assessed. Based on the nutrient content, fermentation quality parameters, and the optimal utilization of licorice stems and leaves, three groups were selected for microbial flora measurement and aerobic stability assessment. The test results indicated that as the proportion of whole-plant corn increased, the crude protein (CP) content in each mixed silage proportion significantly decreased (p < 0.05). Additionally, the pH values across the various proportions exhibited an overall downward trend. Starting from the G5Y5 group, the pH values for each group were consistent, remaining below 4.2. At the phylum level, the dominant bacterial phylum in each group was Firmicutes, followed by Proteobacteria, while the abundance of Bacteroidetes in the G5Y5 group was significantly higher than that in the other groups (p < 0.05). At the genus level, Lentilactobacillus, Citrobacter, and Weissella were identified as the dominant genera. The abundance of Lentilactobacillus in the G4Y6 group was significantly greater than that in the other groups (p < 0.05). Additionally, the abundance of the Citrobacter genus in the G6Y4 group was significantly higher than in the other groups (p < 0.05). Furthermore, the Shannon index of alpha diversity in the G5Y5 group was significantly higher than in the other two groups (p < 0.05). With the extension of aerobic exposure days, the pH value and the number of yeasts and molds in each group gradually increased, while the number of lactic acid bacteria gradually decreased. On the 15th day of aerobic exposure, the pH value of the G5Y5 group was significantly lower than that of the other groups (p < 0.05), and the number of lactic acid bacteria was significantly higher than that of the G6Y4 group (p < 0.05). In summary, the mixed silage from the G5Y5 group exhibits the highest nutritional value, attributed to its superior fermentation quality. Additionally, the microbial diversity and uniformity in the G5Y5 group are enhanced, resulting in a more stable fermentation environment and optimal aerobic stability.

The Lop sheep (LOP), a unique local breed from Xinjiang, exhibits remarkable resilience to the harsh conditions of a desert arid climate and frequent sandstorms, alongside notable fecundity characteristics. This study aims to investigate the adaptability of LOP within this challenging environment by collecting whole blood samples from 110 LOP individuals in the Lop Nur region of Xinjiang for genome resequencing. The resulting data will be compared with whole genome resequencing information from 22 local sheep breeds worldwide to analyze the origin and evolution of LOP. Additionally, comparisons will be made with HUS sheep from warm and humid regions to identify genomic differences through selection signal analysis, thereby assessing the impact of a desert arid climate on the extreme living conditions of LOP. Finally, qPCR was used to preliminarily analyse the impact of the desert arid climate on the genome of the Bactrian sheep. Genetic diversity results indicate that LOP exhibits a relatively stable genetic structure alongside high genetic diversity. The results of population structure analysis and gene flow indicate that we can tentatively posit that LOP is a breed that originated from the Middle East, subsequently mixing with MGS upon its arrival in Xinjiang. Chinese local sheep breeds trace their origins to AMS, with the gene flow evolving from west to east, progressing through mountainous hills (BSBS), basins (LOP, HTS, CLHS, DLS), plains (MGS, TANS), and coastal areas (HUS). LOP is associated with ALTS, BSBS, HTS, CLHS, and DLS, as well as with MGS, HUS, TANS, WDS, and SSSP, in a context of gene exchange, with the degree of exchange diminishing in that order. Selection signal analysis revealed that the candidate genes identified are closely related to adaptation to desert arid climates and disease resistance (PDGFD, NDUFS3, ATP1B2, ITGB8, and CD79A), using HUS as the reference group. qPCR results demonstrated that LOP was significantly upregulated in cardiac, splenic, and lung tissues compared to HUS, suggesting that LOP plays a crucial role in cardiac function, immune response, and respiratory capacity.

Growth and body conformation traits are key determinants of meat production efficiency and economic performance in sheep. However, the genetic architecture underlying these complex traits remains incompletely understood, particularly across multi-breed populations. In this study, we performed a genome-wide association study (GWAS) for seven growth and developmental traits in a combined population of 401 sheep, including Qira Black, Kyrgyz, Dorset × Hu crossbred, and Suffolk × Karakul crossbred sheep. After genotype harmonization and quality control, 47,674 autosomal SNPs were retained for analysis. Population structure was assessed using principal component analysis, and association testing was conducted using a mixed linear model incorporating breed, principal components, and a kinship matrix. A total of 44 independent loci were detected at a nominal significance threshold, encompassing 112 candidate genes. The strongest association was identified for cannon bone circumference near RPS6KA5 (Chr7; p = 1.40 × 10⁻⁷). Several biologically relevant genes involved in osteogenesis, cartilage development, and metabolic regulation were detected, including STEAP3, SLC26A2, PPARGC1B, COL11A1, CALN1, and CITED2. Two genomic regions exhibited pleiotropic effects, which were identified as being associated with multiple traits, suggesting shared genetic regulation of correlated skeletal characteristics. These findings are consistent with a polygenic architecture underlying growth trait in sheep and highlight candidate genomic regions potentially involved in skeletal development and body conformation. Although further validation is required, the identified loci provide preliminary evidence for regions that may influence growth-related phenotypes and offer a reference for future molecular breeding efforts in indigenous and crossbred sheep populations.

This experiment aimed to investigate the effects of replacing alfalfa hay with Glycyrrhiza stem and leaf silage (moisture content: 45%) on rumen in vitro fermentation parameters, nutrient digestibility, and dynamic changes of microbial community composition. In vitro fermentation was conducted with 0% (control group G0A100), 50% (G50A50), and 100% (G100A0) alfalfa hay replaced by semi-dry silage of Glycyrrhiza stems and leaves with 45% moisture content for 72 h. Cumulative gas production (GP), fermentation parameters, microbial community composition at different time points, and post-fermentation nutrient digestibility were determined, with comprehensive evaluation by principal component analysis (PCA) and gray relational analysis (GRA). Results showed that GP of G50A50 and G100A0 was significantly higher than G0A100 at 3 h (p < 0.05), and that of G50A50 was significantly higher than the other two groups at 24 h (p < 0.05). pH of G50A50 was significantly lower than the other two groups at 3 h (p < 0.05). In vitro dry matter digestibility (IVDMD) at 24 h and 72 h, in vitro neutral detergent fiber digestibility (IVNDFD) at 12 h, and in vitro acid detergent fiber digestibility (IVADFD) at 12, 24 and 72 h of G0A100 and G50A50 were significantly higher than G100A0 (p < 0.05). PCA comprehensive scores ranked as G0A100 (0.170) > G50A50 (0.141) > G100A0 (−0.311). GRA comprehensive scores ranked as G50A50 (0.792) > G0A100 (0.756) > G100A0 (0.681). LEfSe analysis indicated distinct microbial biomarkers at 72 h, and KEGG functional profiles were highly consistent among groups. Under the experimental conditions, 50% Glycyrrhiza stem and leaf silage is recommended to replace alfalfa hay in dairy cow diets.