The Anning River, traversing the mineral-rich Panxi region, is highly susceptible to contamination by potentially toxic elements (PTEs). This study systematically investigated the contamination profiles, source apportionment, and probabilistic human health risks of eight PTEs in the surface sediments of the basin. Index-based evaluations revealed that Cd acts as the dominant ecological threat, exhibiting extreme enrichment, whereas V, Cr, and Ni reflect natural background signatures. Receptor modeling via Positive Matrix Factorization (PMF) successfully decoupled four distinct sources: mining and smelting emissions (Cd, Zn), natural lithogenic weathering (V, Cr, Ni), mixed traffic/urban inputs (Pb, Cu), and a Tl-specific mixed source. Crucially, while deterministic approaches suggested safe exposure levels, probabilistic Monte Carlo simulations uncovered hidden vulnerabilities: children face a striking 60.51% probability of exceeding the acceptable total carcinogenic risk (TCR) threshold of 1.0 × 10−4, primarily governed by Cr and Ni. These findings underscore the urgent need for differentiated environmental management in similar mining-impacted basins. Specifically, stringent source controls for Cd must be implemented alongside exposure pathway interruptions to safeguard vulnerable demographics from Cr and Ni.