Forest trees are beleaguered by the ever-increasing onslaught of invasive pests and pathogens, with some species in danger of functional extinction. Recent successes in developing resistant populations using traditional tree breeding assures that some of the affected species will persist in future forests. However, the sheer number of threatened species requires increases in breeding efficiency. The time is right to consider how the use of genomic resources might aid breeding efforts in the next 20 years. Any operational benefit of genomic resources will be minimal without closer collaboration between tree breeders, forest managers, and genomic researchers. We reflect here on what attributes were responsible for the success of traditional resistance breeding programs and whether advances in genomics can realistically accelerate breeding. We conclude that the use of genomics to directly advance resistance breeding efforts in the next 20 years will be limited. Major obstacles will include factors such as the undomesticated nature of most tree species, the quantitative genetic nature of resistance in many species, and the lack of adequate funding to accelerate and more fully develop genomic resources. Despite these limitations, genomic tools have potential to help increase our understanding of the nature of resistance, and the genetic variability in the host, which can aid in the deployment of resistant populations and may assist in marker-assisted selection, particularly for major gene resistance.

Preventing invasions of aquatic and terrestrial habitats is the preferred and most cost-effective approach to address the invasive species threat (see Chap. 6). However, when prevention efforts fail, invasive species can become widespread and deeply embedded in native ecosystems, causing severe impacts (see Chaps. 2, 3, and 4). In such cases, invader control (see Chap. 7) accompanied by restoration facilitates recovery of native species and prevents reinvasion (e.g., Pearson et al. 2016). Here, we summarize the current state of restoration science and highlight critical information gaps that must be overcome to advance ecosystem restoration in terrestrial and aquatic systems affected by invasive plants, insects, diseases, and vertebrates.