High-resolution projections of near-surface winds are crucial for ocean circulation and sea level studies in Southeast Asia, a region characterized by complex coastlines and monsoon variability. This study evaluates the added value of dynamical downscaling using the Weather Research and Forecasting (WRF) model at 9 km resolution, driven by two CMIP6 global climate models (EC-Earth3 and MPI-ESM1-2-HR), to simulate 10 m wind climatology over the Southeast Asian seas. Comparisons were made against ERA5 reanalysis and the parent CMIP6 GCMs, focusing on seasonal mean patterns, interannual variability, and the annual cycle. The WRF simulations demonstrate substantial improvement in capturing the spatial structures of monsoonal winds and regional circulation features. Future wind projections under SSP2-4.5 and SSP5-8.5 scenarios reveal seasonally and spatially heterogeneous trends. The downscaled models project strengthening of winter monsoon winds over the Southeast Asian seas and a weakening of summer monsoon flows, with implications for upper ocean dynamics and regional sea level patterns. The leading modes of variability from EOF analysis indicate basin-wide wind anomalies modulated by periodic signals at ~1 year and ~2–7 years, likely driven by ENSO and the Asian monsoon. The power spectra of principal components reveal that internal variability persists across scenarios, though with increased signal-to-noise ratios (SNRs) in the WRF projections toward the end of the 21st century.