Introduction. Alzheimer’s disease is the most common cause of dementia; however, its pathogenesis remains poorly understood. Autophagy dysfunction, a key process for the clearance of damaged proteins and organelles, plays a significant role in neurodegeneration. However, data on the region-specific distribution of autophagy markers in motor areas of the brain in Alzheimer’s disease are extremely limited. Therefore, this study aimed to immunohistochemically evaluate autophagy markers in neurons of the head of the caudate nucleus and motor cortex of patients with Alzheimer’s disease. Materials and methods. An immunohistochemical study was performed on brain autopsies from three groups: patients with Alzheimer’s disease (n=15), healthy aging participants (n=20), and young patients (n=20). The intensity of the immunohistochemical reaction was assessed in the perikarya of neurons in the head of the caudate nucleus (striatum) and in neurons in layers 3 and 5 of the motor cortex. Results. With aging, neurons in the head of the caudate nucleus exhibit decreased levels of the autophagosome-associated proteins Beclin-1 and LC3b, accompanied by increased levels of the damaged mitochondria marker pS65-Ub and the lysosomal protein LAMP2. In Alzheimer’s disease, neuronal pS65-Ub levels are further elevated, whereas the expression of Beclin-1, LC3b, and LAMP2 significantly reduces. In layers 3 and 5 of the motor cortex, aging is associated with increased levels of Ub and pS65-Ub, together with decreased Beclin-1 and LC3b, while LAMP2 levels remain comparable to those in the young group. In Alzheimer’s disease, Ub, Beclin-1, and LC3b levels remain unchanged relative to the aging group, whereas p-Ub and LAMP2 levels are decreased. Conclusion. In Alzheimer’s disease, a region-specific pattern of autophagolysosomal dysfunction develops in the motor regions of the brain: in the striatum, the damage is more pronounced, whereas in the motor cortex, a less pronounced isolated lysosomal deficit predominates with preserved autophagy initiation. Keywords: autophagy, neurodegeneration, Alzheimer’s disease, motor cortex, striatum