Jonathan Liu

Dr. Jonathan Liu

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 June 2017 in Nature Biomedical Engineering
Verified
Journal Article
Open access
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AGAdam K. Glaser
Adam K. Glaser
NRNicholas P. Reder
Nicholas P. Reder
YCYe Chen
Ye Chen
EMErin F. McCarty
Erin F. McCarty
CYChengbo Yin
Chengbo Yin
JLJonathan Liu
Jonathan Liu
For the 1.7 million patients per year in the US who receive a new cancer diagnosis, treatment decisions are largely based on histopathological specimen examinations. Unfortunately, the gold standard of slide-based microscopic pathology suffers from high inter-observer variability and limited prognostic value due to sampling limitations and the inability to visualize tissue structures and molecular targets in their native 3D context. Here, we show that an open-top light-sheet microscope optimized for non-destructive slide-free pathology of clinical specimens enables the rapid imaging of intact tissues at high resolution over large 2D and 3D fields of view, with the same level of detail as traditional pathology. We demonstrate the utility of this technology for various applications: wide-area surface microscopy to triage surgical specimens (with ~200 μm surface irregularities), rapid intraoperative assessment of tumour-margin surfaces (12.5 s cm−2), and volumetric assessment of optically cleared core-needle biopsies (1 mm in diameter, 2 cm in length). Light-sheet microscopy can be a versatile tool for both rapid surface microscopy and deep volumetric microscopy of human specimens.

4 July 2019 in Nature Communications
Verified
Journal Article
Open access
PDF file
AGAdam K. Glaser
Adam K. Glaser
NRNicholas P. Reder
Nicholas P. Reder
YCYe Chen
Ye Chen
CYChengbo Yin
Chengbo Yin
LWLinpeng Wei
Linpeng Wei
JLJonathan Liu
Jonathan Liu
Recent advances in optical clearing and light-sheet microscopy have provided unprecedented access to structural and molecular information from intact tissues. However, current light-sheet microscopes have imposed constraints on the size, shape, number of specimens, and compatibility with various clearing protocols. Here we present a multi-immersion open-top light-sheet microscope that enables simple mounting of multiple specimens processed with a variety of clearing protocols, which will facilitate wide adoption by preclinical researchers and clinical laboratories. In particular, the open-top geometry provides unsurpassed versatility to interface with a wide range of accessory technologies in the future.

11 May 2022 in Nature Methods
Verified
Journal Article
Closed access
PDF file
AGAdam K. Glaser
Adam K. Glaser
KBKevin W. Bishop
Kevin W. Bishop
LBLindsey A. Barner
Lindsey A. Barner
ESEtsuo A. Susaki
Etsuo A. Susaki
SKShimpei I. Kubota
Shimpei I. Kubota
JLJonathan Liu
Jonathan Liu

15 February 2021 in Nature Biomedical Engineering
Verified
Journal Article
Closed access
PDF file
JLJonathan Liu
Jonathan Liu
AGAdam K. Glaser
Adam K. Glaser
KBKaustav Bera
Kaustav Bera
LTLawrence D. True
Lawrence D. True
NRNicholas P. Reder
Nicholas P. Reder
Anant MadabhushiAnant Madabhushi
Anant Madabhushi

1 February 2004 in Applied Physics B
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Journal Article
Closed access
PDF file
JLJonathan Liu
Jonathan Liu
JJJ.B. Jeffries
J.B. Jeffries
RHR.K. Hanson
R.K. Hanson

1 November 2005 in Applied Optics
Verified
Journal Article
Closed access
PDF file
JLJonathan Liu
Jonathan Liu
GRGregory B. Rieker
Gregory B. Rieker
JJJay B. Jeffries
Jay B. Jeffries
MGMark R. Gruber
Mark R. Gruber
CCCampbell D. Carter
Campbell D. Carter
RHRonald K. Hanson
Ronald K. Hanson
Tunable diode laser absorption measurements of gas temperature and water concentration were made at the exit of a model scramjet combustor fueled on JP-7. Multiplexed, fiber-coupled, near-infrared distributed feedback lasers were used to probe three water vapor absorption features in the 1.34–1.47 μm spectral region (2v1 and v1 + v3 overtone bands). Ratio thermometry was performed using direct-absorption wavelength scans of isolated features at a 4-kHz repetition rate, as well as 2f wavelength modulation scans at a 2-kHz scan rate. Large signal-to-noise ratios demonstrate the ability of the optimally engineered optical hardware to reject beam steering and vibration noise. Successful measurements were made at full combustion conditions for a variety of fuel/air equivalence ratios and at eight vertical positions in the duct to investigate spatial uniformity. The use of three water vapor absorption features allowed for preliminary estimates of temperature distributions along the line of sight. The improved signal quality afforded by 2f measurements, in the case of weak absorption, demonstrates the utility of a scanned wavelength modulation strategy in such situations.