Neal Sondheimer

Dr. Neal Sondheimer

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 February 2018 in American Journal of Respiratory and Critical Care Medicine
Verified
Journal Article
Closed access
MHMeghan J. Hotz
Meghan J. Hotz
DQDanielle Qing
Danielle Qing
MSMichael G. S. Shashaty
Michael G. S. Shashaty
PZPeggy Zhang
Peggy Zhang
HFHilary Faust
Hilary Faust
NMNilam S. Mangalmurti
Nilam S. Mangalmurti
Rationale: Potentially hazardous CpG-containing cell-free mitochondrial DNA (cf-mtDNA) is routinely released into the circulation and is associated with morbidity and mortality in critically ill patients. How the body avoids inappropriate innate immune activation by cf-mtDNA remains unknown. Because red blood cells (RBCs) modulate innate immune responses by scavenging chemokines, we hypothesized that RBCs may attenuate CpG-induced lung inflammation through direct scavenging of CpG-containing DNA. Objectives: To determine the mechanisms of CpG-DNA binding to RBCs and the effects of RBC-mediated DNA scavenging on lung inflammation. Methods: mtDNA on murine RBCs was measured under basal conditions and after systemic inflammation. mtDNA content on human RBCs from healthy control subjects and trauma patients was measured. Toll-like receptor 9 (TLR9) expression on RBCs and TLR9-dependent binding of CpG-DNA to RBCs were determined. A murine model of RBC transfusion after CpG-DNA–induced lung injury was used to investigate the role of RBC-mediated DNA scavenging in mitigating lung injury in vivo. Measurements and Main Results: Under basal conditions, RBCs bind CpG-DNA. The plasma-to-RBC mtDNA ratio is low in naive mice and in healthy volunteers but increases after systemic inflammation, demonstrating that the majority of cf-mtDNA is RBC-bound under homeostatic conditions and that the unbound fraction increases during inflammation. RBCs express TLR9 and bind CpG-DNA through TLR9. Loss of TLR9-dependent RBC-mediated CpG-DNA scavenging increased lung injury in vivo. Conclusions: RBCs homeostatically bind mtDNA, and RBC-mediated DNA scavenging is essential in mitigating lung injury after CpG-DNA. Our data suggest a role for RBCs in regulating lung inflammation during disease states where cf-mtDNA is elevated, such as sepsis and trauma.

3 April 2024 in Nature
Verified
Journal Article
Open access
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DKDwight Koeberl
Dwight Koeberl
ASAndreas Schulze
Andreas Schulze
NSNeal Sondheimer
Neal Sondheimer
GLGerald S. Lipshutz
Gerald S. Lipshutz
TGTarekegn Geberhiwot
Tarekegn Geberhiwot
SGStephanie Grunewald
Stephanie Grunewald
Propionic acidaemia is a rare disorder caused by defects in the propionyl-coenzyme A carboxylase α or β (PCCA or PCCB) subunits that leads to an accumulation of toxic metabolites and to recurrent, life-threatening metabolic decompensation events. Here we report interim analyses of a first-in-human, phase 1/2, open-label, dose-optimization study and an extension study evaluating the safety and efficacy of mRNA-3927, a dual mRNA therapy encoding PCCA and PCCB. As of 31 May 2023, 16 participants were enrolled across 5 dose cohorts. Twelve of the 16 participants completed the dose-optimization study and enrolled in the extension study. A total of 346 intravenous doses of mRNA-3927 were administered over a total of 15.69 person-years of treatment. No dose-limiting toxicities occurred. Treatment-emergent adverse events were reported in 15 out of the 16 (93.8%) participants. Preliminary analysis suggests an increase in the exposure to mRNA-3927 with dose escalation, and a 70% reduction in the risk of metabolic decompensation events among 8 participants who reported them in the 12-month pretreatment period.

11 December 2017 in PLOS Computational Biology
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Journal Article
Open access
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SSSanjay Sonney
Sanjay Sonney
JLJeremy Leipzig
Jeremy Leipzig
MLMarie Lott
Marie Lott
SZShiping Zhang
Shiping Zhang
VPVincent Procaccio
Vincent Procaccio
NSNeal Sondheimer
Neal Sondheimer
Novel or rare variants in mitochondrial tRNA sequences may be observed after mitochondrial DNA analysis. Determining whether these variants are pathogenic is critical, but confirmation of the effect of a variant on mitochondrial function can be challenging. We have used available databases of benign and pathogenic variants, alignment between diverse tRNAs, structural information and comparative genomics to predict the impact of all possible single-base variants and deletions. The Mitochondrial tRNA Informatics Predictor (MitoTIP) is available through MITOMAP at www.mitomap.org. The source code for MitoTIP is available at www.github.com/sonneysa/MitoTIP.

28 September 2023 in Nature Metabolism
Verified
Journal Article
Closed access
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JVJerry Vockley
Jerry Vockley
NSNeal Sondheimer
Neal Sondheimer
MPMarja Puurunen
Marja Puurunen
GDGeorge A. Diaz
George A. Diaz
IGIlona Ginevic
Ilona Ginevic
ABAoife M. Brennan
Aoife M. Brennan

29 March 2024 in Nature Genetics
Verified
Journal Article
Closed access
PDF file
DFDarcy L. Fehlings
Darcy L. Fehlings
MZMehdi Zarrei
Mehdi Zarrei
WEWorrawat Engchuan
Worrawat Engchuan
NSNeal Sondheimer
Neal Sondheimer
BTBhooma Thiruvahindrapuram
Bhooma Thiruvahindrapuram
SSStephan Scherer
Stephan Scherer

19 March 2021 in Science Advances
Verified
Journal Article
Open access
PDF file
PNPriyanka Nandakumar
Priyanka Nandakumar
CTChao Tian
Chao Tian
JOJared O’connell
Jared O’connell
DHDavid Hinds
David Hinds
APAndrew Paterson
Andrew Paterson
NSNeal Sondheimer
Neal Sondheimer
The role of the nuclear genome in maintaining the stability of the mitochondrial genome (mtDNA) is incompletely known. mtDNA sequence variants can exist in a state of heteroplasmy, which denotes the coexistence of organellar genomes with different sequences. Heteroplasmic variants that impair mitochondrial capacity cause disease, and the state of heteroplasmy itself is deleterious. However, mitochondrial heteroplasmy may provide an intermediate state in the emergence of novel mitochondrial haplogroups. We used genome-wide genotyping data from 982,072 European ancestry individuals to evaluate variation in mitochondrial heteroplasmy and to identify the regions of the nuclear genome that affect it. Age, sex, and mitochondrial haplogroup were associated with the extent of heteroplasmy. GWAS identified 20 loci for heteroplasmy that exceeded genome-wide significance. This included a region overlapping mitochondrial transcription factor A (TFAM), which has multiple roles in mtDNA packaging, replication, and transcription. These results show that mitochondrial heteroplasmy has a heritable nuclear component.