Background: The coral microbiome plays a key role in host health by being involved in energy metabolism, nutrient cycling, and immune system formation. Inoculating coral with beneficial bacterial consortia may enhance the ability of this host to cope with complex and changing marine environments. In this study, the coral Pocillopora damicornis was inoculated with a beneficial microorganisms for corals (BMC) consortium to investigate how the coral host and its associated microbial community would respond. Results: High-throughput 16S rRNA gene sequencing revealed no significant differences in bacterial community α-diversity. However, the bacterial community structure differed significantly between the BMC and placebo groups at the end of the experiment. Addition of the BMC consortium significantly increased the relative abundance of potentially beneficial bacteria, including the genera Mameliella and Endozoicomonas. Energy reserves and calcification rates of the coral host were also improved by the addition of the BMC consortium. Co-occurrence network analysis indicated that inoculation of coral with the exogenous BMC consortium improved the physiological status of the host by shifting the coral-associated microbial community structure. Conclusions: Manipulating the coral-associated microbial community may enhance the physiology of coral in normal aquarium conditions (no stress applied), which may hypothetically contribute to resilience and resistance in this host.

Background: Seagrasses offer various ecosystem services and possess high levels of primary productivity. However, the development of mariculture has affected the homeostasis of seagrass meadow ecosystems. Plant-microbiome associations are essential for seagrasses health, but little is known about the role of environmental microbiomes and how they affect seagrass in a mariculture environment. In this study, we investigated the influence of mariculture on the rhizosphere and seawater microbiome surrounding Zostera marina and focused on the bacterial, eukaryotic, and fungal components in the composition, diversity, metabolism, and responses to mariculture-related environmental factors. Results: Significant differences in the composition, richness, diversity, and internal relations of the bacterial community between the seawater and rhizosphere sediment surrounding Z. marina were observed, while differences in the eukaryotic and fungal communities were less significant. More complex bacterial and fungal co-occurrence networks were found in the seawater and rhizosphere sediment of the Saccharina japonica (SJ) and sea cucumber (SC) culture zones. The seawater in the SJ zone had higher levels of dissimilatory and assimilatory nitrate reduction, denitrification, and nitrogen fixation processes than the other three zones. The assimilatory sulfate reduction enzymes were higher in the rhizosphere sediments of the SJ zone than in the other three zones. Tetracycline, sulfonamide, and diaminopyrimidine resistance genes were enriched in the mariculture SJ and SC zones. Conclusions: Our findings might contribute to a better understanding of the effects of mariculture on the seagrass and the meadow ecosystems and thus revealing their potential operating mechanisms. These insights may serve to raise awareness of the effects of human activities on natural ecosystems, regulation of antibiotic usage, and environmental restoration.

Coral reefs experience frequent and severe disturbances that can overwhelm their natural resilience. In such cases, ecological restoration is essential for coral reef recovery. Sexual reproduction has been reported to present the simplest and most cost-effective means for coral reef restoration. However, larval settlement and post-settlement survival represent bottlenecks for coral recruitment in sexual reproduction. While bacteria play a significant role in triggering coral metamorphosis and settlement in many coral species, the underlying molecular mechanisms remain largely unknown. In this study, we employed a transcriptome-level analysis to elucidate the intricate interactions between bacteria and coral larvae that are crucial for the settlement process. High Metabacillus indicus strain cB07 inoculation densities resulted in the successful induction of metamorphosis and settlement of coral Pocillopora damicoris larvae. Compared with controls, inoculated coral larvae exhibited a pronounced increase in the abundance of strain cB07 during metamorphosis and settlement, followed by a significant decrease in total lipid contents during the settled stage. The differentially expressed genes (DEGs) during metamorphosis were significantly enriched in amino acid, protein, fatty acid, and glucose related metabolic pathways. In settled coral larvae induced by strain cB07, there was a significant enrichment of DEGs with essential roles in the establishment of a symbiotic relationship between coral larvae and their symbiotic partners. The photosynthetic efficiency of strain cB07 induced primary polyp holobionts was improved compared to those of the negative controls. In addition, coral primary polyps induced by strain cB07 showed significant improvements in energy storage and survival. Our findings revealed that strain cB07 can promote coral larval settlement and enhance post-settlement survival and fitness. Manipulating coral sexual reproduction with strain cB07 can overcome the current recruitment bottleneck. This innovative approach holds promise for future coral reef restoration efforts.

The nitrogen fixation rates of planktonic and intertidal benthic cyanobacteria were investigated in Sanya Bay from 2003 to 2005. Trichodesmium thiebautii was the dominant species of planktonic cyanobacteria during our study. Significant seasonal and spatial variations in Trichodesmium spp. abundance were observed (P<0.01). The highest Trichodesmium concentrations occurred during intermonsoon periods and in the outer region of Sanya Bay (Outer Bay stations). At fixed station S03 the abundance of T. thiebautii ranged from 1.14×103 to 2060×103 trichomes m–2, with an annual mean of 273×103 trichomes m–2. The average nitrogen fixation rate per colony of T. thiebautii was 0.27 nmol N h-1 colony-1 and it did not show any obvious seasonal variations. Nitrogen fixation by planktonic cyanobacteria was highest in the Outer Bay stations, where the estimated amount of new nitrogen introduced by Trichodesmium contributed 0.03 to 1.63% of the total primary production and up to 11.64% of the new production. Statistical results showed that significant seasonal and spatial variations of nitrogen fixation rates were found among the intertidal communities. The main benthic nitrogen-fixing cyanobacteria were identified as members of the genera Anabaena, Calothrix, Lyngbya, Nostoc and Oscillatoria. The highest nitrogen fixation rate was found in microbial mats and the lowest in reefs and rocky sediments. All the benthic communities studied presented their highest nitrogen fixation activity in summer, with an average nitrogen fixation rate of 33.31 µmol N h-1 m-2, whereas the lowest nitrogen activity was detected in winter, with an average nitrogen fixation rate of 5.66 µmol N h-1 m-2. A Pearson correlation analysis indicated that the nitrogen fixation rate of three types of intertidal communities was significantly positively correlated to seawater temperature (P<0.05), whereas only the nitrogen fixation rate of the reefs and rock communities was significantly negatively correlated to seawater salinity (P<0.05).

Bacteria play a significant role in triggering coral larval metamorphosis and settlement in many coral species. However, the underlying molecular mechanisms behind coral larval metamorphosis and settlement triggered by bacteria remain enigmatic. Thus, we perform a bacteria-induced metamorphosis and settlement experiment using larvae of Pocillopora damicornis along with high-throughput sequencing, proteomic, and metabolomic analyses. Our results demonstrate that the Metabacillus indicus strain cB07 significantly alters the composition of the microbial community in cultured seawater and coral larvae. Genera associated with promoting coral larval metamorphosis and settlement, including Leisingera and Thalassobius, along with the anti - fouling genus Winogradskyella, undergo notable changes in the coral larvae and culture water. Differentially expressed proteins (DEPs) and metabolites (DEMs) in the cB07 - induced coral larvae are significantly enriched in the immune system, signal transduction, and energy metabolism. According to a protein and metabolite change model, strain cB07 induces coral larval settlement and metamorphosis through retinoic aldehyde pathway, the tricarboxylic acid cycle, and GABA synthesis. Our findings together help to elucidate how associated bacteria interact with coral holobionts and how M. indicus cB07 triggers coral larval metamorphosis and settlement, providing insight into the role bacteria play in marine invertebrates.