Sarah Jean Pain

Dr. Sarah Jean Pain


Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 October 2015 in BMC Genomics
Verified
Journal Article
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APAmy Paten
Amy Paten
EDElizabeth Duncan
Elizabeth Duncan
SPSarah Jean Pain
Sarah Jean Pain
SPSam Walter Peterson
Sam Walter Peterson
PKPaul R. Kenyon
Paul R. Kenyon
PDPeter Dearden
Peter Dearden
The mammary gland is a dynamic organ that undergoes dramatic physiological adaptations during the transition from late pregnancy to lactation. Investigation of the molecular basis of mammary development and function will provide fundamental insights into tissue remodelling as well as a better understanding of milk production and mammary disease. This is important to livestock production systems and human health. Here we use RNA-seq to identify differences in gene expression in the ovine mammary gland between late pregnancy and lactation. Between late pregnancy (135 days of gestation ± 2.4 SD) and lactation (15 days post partum ± 1.27 SD) 13 % of genes in the sheep genome were differentially expressed in the ovine mammary gland. In late pregnancy, cell proliferation, beta-oxidation of fatty acids and translation were identified as key biological processes. During lactation, high levels of milk fat synthesis were mirrored by enrichment of genes associated with fatty acid biosynthesis, transport and lipogenesis. Protein processing in the endoplasmic reticulum was enriched during lactation, likely in support of active milk protein synthesis. Hormone and growth factor signalling and activation of signal transduction pathways, including the JAK-STAT and PPAR pathways, were also differently regulated, indicating key roles for these pathways in functional development of the ovine mammary gland. Changes in the expression of epigenetic regulators, particularly chromatin remodellers, indicate a possible role in coordinating the large-scale transcriptional changes that appear to be required to switch mammary processes from growth and development during late pregnancy to synthesis and secretion of milk during lactation. Coordinated transcriptional regulation of large numbers of genes is required to switch between mammary tissue establishment during late pregnancy, and activation and maintenance of milk production during lactation. Our findings indicate the remarkable plasticity of the mammary gland, and the coordinated regulation of multiple genes and pathways to begin milk production. Genes and pathways identified by the present study may be important for managing milk production and mammary development, and may inform studies of diseases affecting the mammary gland.

2 December 2014 in Animal Production Science
Verified
Journal Article
Closed access
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SPSarah Jean Pain
Sarah Jean Pain
JCJ. R. Corkran
J. R. Corkran
PKP. R. Kenyon
P. R. Kenyon
SMS. T. Morris
S. T. Morris
PKPeter Kemp
Peter Kemp
The objective of the three studies reported here was to examine the grazing preference and diet selection of lambs for plantain (Plantago laceolata), chicory (Cichorium intybus L.) and red clover (Trifolium pratense) compared with New Zealand’s conventional ryegrass (Lolium perenne) pasture. Study One investigated the diet selection of lambs for 7 days at the beginning of March, using transects with tagged plants on a mixed plantain, chicory and red clover sward. Study Two was an outdoor preference experiment conducted in both March and May by observation of lambs on adjacent monocultures of plantain, chicory and red clover. Study Three was an indoor feeding trial that aimed to determine the intake rate and relative preference of weaned lambs for two herbages (chicory and plantain), two legumes (lucerne and red clover) and ryegrass pasture, in both spring (November) and summer (March). Study One determined that when grazing the mixed sward for a period of 7 days, the mean day that lambs commenced grazing red clover, chicory and plantain was Day 1.6 ± 0.1, 4.8 ± 0.2 and 6.2 ± 0.2, respectively, with significant (P < 0.05) differences between all species. In relation to preference as observed in Study Two, more lambs (P < 0.05) were seen to be grazing red clover at any time, and more lambs were grazing chicory (P < 0.05) than plantain. There was, also an interaction of season with preference, with plantain becoming more acceptable (P < 0.05) to the lambs in May (late autumn) versus March (early autumn). In Study Three, the term ‘preference’ refers to the natural logarithm of the ratio of amounts eaten between the forage being tested and the alternative forage offered simultaneously. This was established in triplicate by offering pairs of all the plant species side by side to individually penned lambs. The results indicated that plantain was consumed at a similar rate (P > 0.05) to that of ryegrass, whereas red clover and chicory had higher voluntary feed intakes, likely due to lower fibre content. The intake rate of chicory was greater in summer than spring and may be related to increased palatability due to the increased water-soluble carbohydrate content of chicory in summer. Regardless of season, average preference for red clover was always higher (P < 0.05) than that of chicory, plantain and ryegrass. Plantain was considerably less preferred in summer than spring. Differences in diet selection and preference may offer a unique opportunity to manipulate utilisation of pastures using a diverse range of plant species.

18 October 2021 in Agriculture
Verified
Journal Article
Open access
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JWJames CHEGE WANGUI
James CHEGE WANGUI
PKPaul R. Kenyon
Paul R. Kenyon
PTPeter Tozer
Peter Tozer
JMJames P. Millner
James P. Millner
SPSarah Jean Pain
Sarah Jean Pain
New Zealand hill country sheep and beef farms contain land of various slope classes. The steepest slopes have the lowest pasture productivity and livestock carrying capacity and are the most vulnerable to soil mass movements. A potential management option for these areas of a farm is the planting of native shrubs which are browsable and provide erosion control, biodiversity, and a source of carbon credits. A bioeconomic whole farm model was developed by adding a native shrub sub-model to an existing hill country sheep and beef enterprise model to assess the impacts on feed supply, flock dynamics, and farm economics of converting 10% (56.4 hectares) of the entire farm, focusing on the steep slope areas, to native shrubs over a 50-year period. Two native shrub planting rates of 10% and 20% per year of the allocated area were compared to the status quo of no (0%) native shrub plantings. Mean annual feed supply dropped by 6.6% and 7.1% causing a reduction in flock size by 10.9% and 11.6% for the 10% and 20% planting rates, respectively, relative to 0% native shrub over the 50 years. Native shrub expenses exceeded carbon income for both planting rates and, together with reduced income from sheep flock, resulted in lower mean annual discounted total sheep enterprise cash operating surplus for the 10% (New Zealand Dollar (NZD) 20,522) and 20% (NZD 19,532) planting scenarios compared to 0% native shrubs (NZD 22,270). All planting scenarios had positive Net Present Value (NPV) and was highest for the 0% native shrubs compared to planting rates. Break-even carbon price was higher than the modelled carbon price (NZD 32/ New Zealand Emission Unit (NZU)) for both planting rates. Combined, this data indicates planting native shrubs on 10% of the farm at the modelled planting rates and carbon price would result in a reduction in farm sheep enterprise income. It can be concluded from the study that a higher carbon price above the break-even can make native shrubs attractive in the farming system.

24 November 2021 in Animals
Verified
Journal Article
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GMGayani Priyadarshani Herath Hitihamy Mudiyanselage
Gayani Priyadarshani Herath Hitihamy Mudiyanselage
SPSarah Jean Pain
Sarah Jean Pain
PKPaul R. Kenyon
Paul R. Kenyon
HBHugh Blair
Hugh Blair
WMWeeks 7-8 by Patrick Morel
Weeks 7-8 by Patrick Morel
This study was designed to investigate the influence of pellet fibre level, milk replacer composition and age at weaning on growth and body composition of lambs reared artificially. Romney ram lambs were randomly allocated to one of three rearing treatments; HFP57: commercial milk replacer to 57 days of age, and high fibre concentrate pellets; HFP42: commercial milk replacer with early weaning at 42 days of age, and high fibre concentrate pellets; LFP42: high protein milk replacer from 2–16 days of age followed by commercial milk replacer with early weaning at 42 days of age, and low fibre concentrate pellets. Lambs were slaughtered at 57 days of age. Overall average daily liveweight gain of lambs did not differ (p > 0.05) between treatments. Dressing out percentage, carcass weight, empty small intestine and omental fat were higher (p < 0.05) in HFP57 than in both HFP42 and LFP42 lambs. HFP42 and LFP42 lambs had heavier (p < 0.05) empty rumen weights. Whole body protein content was higher (p < 0.05) in HFP42 lambs compared to both HFP57 and LFP42 lambs. Fat content and daily fat deposition were greater (p < 0.05) in HFP57 lambs than HFP42 and LFP42 lambs. Weaning lambs at 42 days of age with provision of either low or high fibre concentrate pellets, resulted in similar growth rates, reduced whole body fat deposition and was a more cost-effective rearing regimen.

28 September 2021 in Animals
Verified
Journal Article
Open access
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MZMandefrot Zeleke
Mandefrot Zeleke
PKPaul R. Kenyon
Paul R. Kenyon
Kate Jade FLAYKate Jade FLAY
Kate Jade FLAY
DADanielle Aberdein
Danielle Aberdein
SPSarah Jean Pain
Sarah Jean Pain
ARAnne L. Ridler
Anne L. Ridler
In non-dairy ewes, udder defects hinder the survival and weight gain of their pre-weaned lambs. The objectives of this study were to determine the effects of palpable udder defects on milk yield, somatic cell count (SCC), and milk composition in non-dairy Romney ewes. Ewes with a history of udder defects or normal udders were selected for the study. Of a total of 48 ewes that lambed, 30 ewes reared at least one lamb, and were milked six times, once weekly, for the first six weeks of lactation. Udder halves were palpated and scored at each milking event. Multivariate linear mixed models examined the impacts of udder defects on udder-half and whole-udder milk yield, SCC, and milk composition (fat, protein, lactose, total solids, and solids non-fat (SNF)). Across the six examinations, 24.7% of the total 352 udder-half examinations were observed to be defective. Udder halves that were defective at least once produced on average 57.9% less (p < 0.05) milk than normal udder halves, while normal udder halves with a contralateral defective half yielded 33.5% more (p < 0.05) milk than normal udder halves. Successive occurrence of both hard and lump udder defect categories in an udder-half, udder defect detection early in lactation, and a high frequency of udder defect detection were all associated with udder-half milk yield loss (p < 0.05). At the whole-udder level, no differences in milk yield (p > 0.05) were observed between those with one udder-half defective and both normal udder-halves. However, udders in which one udder half was categorised as hard but progressed to lump and remained as lump until 42 days of lactation produced less (p < 0.05) milk compared with normal udders. With the exception of SNF, there were no significant associations (p > 0.05) between milk composition parameters and udder defect. Overall, these findings emphasise the importance of udder health in non-dairy ewes and the potential effect of udder defects on their lambs.

10 August 2022 in Plants
Verified
Journal Article
Open access
PDF file
JWJames CHEGE WANGUI
James CHEGE WANGUI
JMJames P. Millner
James P. Millner
PKPaul R. Kenyon
Paul R. Kenyon
PTPeter Tozer
Peter Tozer
WMWeeks 7-8 by Patrick Morel
Weeks 7-8 by Patrick Morel
SPSarah Jean Pain
Sarah Jean Pain
Information on the nutritive value and in vitro fermentation characteristics of native shrubs in New Zealand is scant. This is despite their potential as alternatives to exotic trees and shrubs for supplementary fodder, and their mitigation of greenhouse gases and soil erosion on hill-country sheep and beef farms. The objectives of this study were to measure the in vitro fermentation gas production, predict the parameters of the in vitro fermentation kinetics, and estimate the in vitro fermentation of volatile fatty acids (VFA), microbial biomass (MBM), and greenhouse gases of four native shrubs (Coprosma robusta, Griselinia littoralis, Hoheria populnea, and Pittosporum crassifolium) and an exotic fodder tree species, Salix schwerinii. The total in vitro gas production was higher (p < 0.05) for the natives than for the S. schwerinii. A prediction using the single-pool model resulted in biologically incorrect negative in vitro total gas production from the immediately soluble fraction of the native shrubs. However, the dual pool model better predicted the in vitro total gas production and was in alignment with the measured in vitro fermentation end products. The in vitro VFA and greenhouse gas production from the fermentation of leaf and stem material was higher (p < 0.05), and the MBM lower (p < 0.05), for the native shrubs compared to the S. schwerinii. The lower in vitro total gas production, VFA, and greenhouse gases production and higher MBM of the S. schwerinii may be explained by the presence of condensed tannins (CT), although this was not measured and requires further study. In conclusion, the results from this study suggest that when consumed by ruminant livestock, browsable native shrubs can provide adequate energy and microbial protein, and that greenhouse-gas production from these species is within the ranges reported for typical New Zealand pastures.