Önder Kırca

Dr. Önder Kırca

orcid

Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 March 2024 in Preprints.org
Verified
Preprint
Open access
PDF file
KPKevisa Potska
Kevisa Potska
AKAnastasia Katseli
Anastasia Katseli
KAKonstantinos Agiannitopoulos
Konstantinos Agiannitopoulos
CNChristina Ntogka
Christina Ntogka
GTGeorgios N Tsaousis
Georgios N Tsaousis
MOMustafa Ozdogan
Mustafa Ozdogan
Pancreatic cancer stands out as one of the most lethal forms of malignancies, representing 2% of all cancer cases and contributing to 5% of cancer-related fatalities. Therefore, early detection of pancreatic cancer is crucial for enhancing treatment outcomes. Various hereditary cancer syndromes have been linked to an elevated risk of developing pancreatic cancer, suggesting potential benefits from surveillance strategies for individuals at risk. Presently, precision medicine employs PARP inhibitor therapy for pancreatic cancer patients carrying germline variants in Homologous Recombination Repair (HRR) genes. Our objective was to ascertain the occurrence of germline pathogenic/likely pathogenic variants in genes predisposing to cancer among pancreatic cancer patients. Methodologically, we analyzed 184 pancreatic cancer patients referred to our laboratory for genetic examination. Utilizing a Next-Generation Sequencing (NGS) approach, we scrutinized 52 genes implicated in hereditary cancer predisposition. Our findings revealed that 21% of the patients analyzed harbored germline pathogenic/likely pathogenic variants. Within this subset, 48% exhibited positive results in pancreatic cancer susceptibility genes, namely ATM (17%), BRCA1 (12%), BRCA2 (7%), CDKN2A (7%), and PALB2. Significantly, 64.3% of the pathogenic variants were associated with genes involved in the HRR pathway (ATM, BRCA1, BRCA2, BRIP1, CHEK2, FANCL, MRE11, PALB2, RAD50, RAD51B and RAD51C). In conclusion, our study underscores the significance of multigene genetic testing for pancreatic cancer patients, with 21% of individuals yielding findings linked to pancreatic or other cancer predisposition. Moreover, patients carried pathogenic/likely pathogenic variants in HRR genes, potentially benefiting from targeted therapies such as PARP inhibitors or platinum-based treatments.

24 October 2026 in Biomedicines
Verified
Journal Article
Open access
PDF file
ÖKÖnder Kırca
Önder Kırca
MCMuharrem Okan Cakir
Muharrem Okan Cakir
MKmirac sefa Kaya
mirac sefa Kaya
BKBegüm Kurt
Begüm Kurt
BKBetul Karademir-Yilmaz
Betul Karademir-Yilmaz
MOMustafa Ozdogan
Mustafa Ozdogan
The public release of ChatGPT on 30 November 2022, constituted an inflection point in the history of artificial intelligence applied to medicine. Within oncology, a specialty defined by the need to synthesize complex, heterogeneous, and rapidly evolving clinical data, large language models [LLMs] have transitioned within a remarkably compressed timeline from objects of academic curiosity to the threshold of institutional deployment. This narrative review maps the trajectory of LLM integration across the oncological care continuum, from patient-facing information tools to multidisciplinary tumor board decision support. The clinical landscape is organized around a three-tier framework of readiness: domains in which LLMs demonstrate consistent supportive performance across predominantly retrospective, benchmark-based, and early implementation studies; domains in which early evidence is promising but prospective validation is lacking; and domains that remain aspirational and require substantial technical and regulatory development before adoption can be responsibly recommended. A dedicated analysis is presented of the mechanistic distinction between static parametric knowledge and dynamic retrieval-augmented generation [RAG], the probabilistic origins of factual inaccuracy in language model outputs, and the role of authoritative guideline grounding in constructing trustworthy AI architectures for oncology. The review examines how multimodal LLMs [MLLMs] are beginning to integrate radiomics, whole-slide pathology imaging [WSI], next-generation sequencing [NGS] data, transcriptomics, and proteomics into unified oncological reasoning workflows and how this convergence informs the precision oncology vision. The structural and linguistic barriers encountered when LLMs are deployed in non-English clinical environments, with particular reference to the healthcare context, are examined as a representative case of the global versus local challenge that confronts any international deployment strategy. The unresolved legal landscape of liability for AI-assisted clinical errors, the regulatory classification of LLMs as software as a medical device [SaMD], and the human-in-the-loop imperative are analyzed as prerequisites for responsible deployment. Our central argument is that LLMs derive their clinical value not from autonomous decision-making but from their capacity to function as perpetually available, rigorously grounded, and cognitively augmentative assistants to the human oncologist.

1 September 2026 in Preprints.org
Verified
Preprint
Open access
PDF file
ÖKÖnder Kırca
Önder Kırca
MCMuharrem Okan Cakir
Muharrem Okan Cakir
MKmirac sefa Kaya
mirac sefa Kaya
BKBegüm Kurt
Begüm Kurt
BKBetul Karademir-Yilmaz
Betul Karademir-Yilmaz
MOMustafa Ozdogan
Mustafa Ozdogan
The public release of ChatGPT on November 30, 2022 constituted an inflection point in the history of artificial intelligence applied to medicine. Within oncology, a specialty defined by the need to synthesize complex, heterogeneous, and rapidly evolving clinical data, large language models (LLMs) have transitioned within a remarkably compressed timeline from objects of academic curiosity to the threshold of institutional deployment. This narrative review maps the trajectory of LLM integration across the oncological care continuum, from patient-facing information tools to multidisciplinary tumor board decision support. The clinical landscape is organized around a three-tier framework of readiness: domains in which LLMs already demonstrate robust, evidence-supported performance; domains in which early evidence is promising but prospective validation is lacking; and domains that remain aspirational and require substantial technical and regulatory development before adoption can be responsibly recommended. A dedicated analysis is presented of the mechanistic distinction between static parametric knowledge and dynamic retrieval-augmented generation (RAG), the probabilistic origins of factual inaccuracy in language model outputs, and the role of authoritative guideline grounding in constructing trustworthy AI architectures for oncology. The review examines how multimodal LLMs (MLLMs) are beginning to integrate radiomics, whole-slide pathology imaging (WSI), next-generation sequencing (NGS) data, transcriptomics, and proteomics into unified oncological reasoning workflows, and how this convergence informs the precision oncology vision. The structural and linguistic barriers encountered when LLMs are deployed in non-English clinical environments, with particular reference to the healthcare context, are examined as a representative case of the global versus local challenge that confronts any international deployment strategy. The unresolved legal landscape of liability for AI-assisted clinical errors, the regulatory classification of LLMs as software as a medical device (SaMD), and the human-in-the-loop imperative are analyzed as prerequisites for responsible deployment. Our central argument is that LLMs derive their clinical value not from autonomous decision-making but from their capacity to function as perpetually available, rigorously grounded, and cognitively augmentative assistants to the human oncologist.