Introduction. ABC transporters (ATP-binding cassette transporters) are a class of membrane transporter proteins that play a crucial role in various physiological processes, including nutrient uptake, the secretion of signaling molecules, and the elimination of toxins. In addition to the above physiological functions, these proteins play a crucial role in the development of multidrug resistance in malignant neoplasms, thereby contributing to the progression of the disease. The main types of ABC transporters, for which their clinical significance in the development of drug resistance to chemotherapy and targeted therapy in many malignant neoplasms has been proven, include P-glycoprotein (P-gp, MDR1), BCRP and MRP1. However, the role of these proteins in the pathogenesis of gastrointestinal stromal tumors (GIST) and the formation of their resistance to chemotherapy is poorly understood. Aim. To assess the expression of ABC transporters (ABCB1/MDR1, ABCC1/MRP1, and ABCG2/BCRP), the intracellular content of their fluorescent substrates, and stemness markers in imatinib mesylate (IM) sensitive and resistant GIST cell lines, and their role in resistance to chemotherapy. Materials and methods. The study was conducted using GIST cell lines sensitive (GIST T-1) and resistant (GIST T-1R and GIST 430) to IM. As a positive control for the overexpression of ABC transporters in tumor cell lines, we utilized the previously obtained subline of triple-negative breast cancer HCC 1806 Tx-R, which has been proven to exhibit overexpression of ABC transporters. Results. We observed the increased expression of some ABC transporters (MRP1, ABCG2, and MDR1) in the IM-resistant GIST 430 cell line. This resulted in a significant increase in the excretion of their fluorescent substrate rhodamine 123 compared to the IM-resistant GIST T-1R cell line. At the same time, in the presence of P-gp inhibitors (cyclosporine A and tariquidar), as well as MRP1 (MK-571), there was a significant increase in the number of rhodamine-positive cells. A similar pattern was observed for some chemotherapeutic agents exhibiting autofluorescent activity, specifically an increase in the intensity of their fluorescence in the presence of corresponding ABC transporter inhibitors, indicating an increase in their intracellular concentration in GIST 430. Moreover, for doxorubicin, its excretion from GIST cells was proven exclusively by MRP1 protein, while mitoxantrone was “pumped out” from cells mainly through P-gp. The result of hyperexpression of these transporters in GIST 430 cells was their resistance to the drugs mentioned above, as evidenced by a 4- and 5-fold increase in the values of half-maximal inhibitory concentrations (IC50) for doxorubicin and mitoxantrone, respectively, in relation to GIST 430 cells compared to the GIST T-1R cell line. Based on the results of expression of stemness markers (CD44 and CD133) and colony formation, no evidence of the presence of a pool of cells with a stemness phenotype in the GIST 430 cell line was obtained. Conclusion. One of the mechanisms of secondary resistance of GIST 430 cells to chemotherapy is the hyperexpression of ABC transporters (MRP1, ABCG2, and MDR1), which is not associated with the presence of cells with a stemness phenotype in this cell line.