Dave Clarke

Dr. Dave Clarke


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 November 2016 in Genome Biology
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DMDuane Mckenna
Duane Mckenna
ESErin Scully
Erin Scully
Yannick PauchetYannick Pauchet
Yannick Pauchet
KHKelli Hoover
Kelli Hoover
Roy KirschRoy Kirsch
Roy Kirsch
SRStephen Richards
Stephen Richards
Relatively little is known about the genomic basis and evolution of wood-feeding in beetles. We undertook genome sequencing and annotation, gene expression assays, studies of plant cell wall degrading enzymes, and other functional and comparative studies of the Asian longhorned beetle, Anoplophora glabripennis, a globally significant invasive species capable of inflicting severe feeding damage on many important tree species. Complementary studies of genes encoding enzymes involved in digestion of woody plant tissues or detoxification of plant allelochemicals were undertaken with the genomes of 14 additional insects, including the newly sequenced emerald ash borer and bull-headed dung beetle. The Asian longhorned beetle genome encodes a uniquely diverse arsenal of enzymes that can degrade the main polysaccharide networks in plant cell walls, detoxify plant allelochemicals, and otherwise facilitate feeding on woody plants. It has the metabolic plasticity needed to feed on diverse plant species, contributing to its highly invasive nature. Large expansions of chemosensory genes involved in the reception of pheromones and plant kairomones are consistent with the complexity of chemical cues it uses to find host plants and mates. Amplification and functional divergence of genes associated with specialized feeding on plants, including genes originally obtained via horizontal gene transfer from fungi and bacteria, contributed to the addition, expansion, and enhancement of the metabolic repertoire of the Asian longhorned beetle, certain other phytophagous beetles, and to a lesser degree, other phytophagous insects. Our results thus begin to establish a genomic basis for the evolutionary success of beetles on plants.

20 December 2018 in Diversity
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Journal Article
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DCDave Clarke
Dave Clarke
ALAjay Limaye
Ajay Limaye
DMDuane Mckenna
Duane Mckenna
Rolf OberprielerRolf Oberprieler
Rolf Oberprieler
Only a few weevils have been described from Burmese amber, and although most have been misclassified, they show unusual and specialised characters unknown in extant weevils. In this paper, we present the results of a study of a much larger and more diverse selection of Burmese amber weevils. We prepared all amber blocks to maximise visibility of structures and examined these with high-magnification light microscopy as well as CT scanning (selected specimens). We redescribe most previously described taxa and describe 52 new species in 26 new genera, accompanied by photographs. We compare critical characters of these weevils with those of extant taxa and outline the effects of distortion on their preservation and interpretation. We conclude that only two weevil families are thus far represented in Burmese amber, Nemonychidae and a newly recognised family, Mesophyletidae, which appears closely related to Attelabidae but cannot be accommodated in this family. The geniculate antennae and long rostrum with exodont mandibles of most Mesophyletidae indicate that they were highly specialised phytophages of early angiosperms preserved in the amber, likely ovipositing in flowers or seeds. This weevil fauna appears to represent an extinct mid-Cretaceous ecosystem and fills a critical gap in the fossil record of weevils.

28 June 2019 in Insects
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CBCristian Beza-Beza
Cristian Beza-Beza
LJLarry Jiménez-Ferbans
Larry Jiménez-Ferbans
DCDave Clarke
Dave Clarke
PRPedro Reyes-Castillo
Pedro Reyes-Castillo
DMDuane Mckenna
Duane Mckenna
Mexico has the third highest diversity of passalid beetles in the World. Here we describe Tonantzin new genus, a new monotypic genus, potentially endemic to the mountains of central Mexico. The new genus is diagnosed by a new configuration of characters from the mesofrontal structure (MFS) in addition to other characters. The MFS in Passalidae has been treated either as a composite complex character or a combination of individual characters. Using a broad taxonomic sample within Proculini, we discuss the taxonomic and systematic implications of the MFS for the tribe. We define the MFS type tepetl. Given the importance of the MFS for passalid taxonomy we propose a new delimitation of the structure using boundaries based on internal and external head structures. We argue that the treatment of the MFS as a complex character better captures the nature of this structure but we ultimately find a need to standardize the way in which this structure is described in the taxonomic literature and used in phylogenetic analyses.

22 January 2019 in Diversity
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DCDave Clarke
Dave Clarke
Rolf OberprielerRolf Oberprieler
Rolf Oberprieler
In a recent paper we published on the weevil fauna preserved in Burmese amber, two newly proposed generic names were subsequently identified as preoccupied names (Elwoodius Clarke & Oberprieler and Platychirus Clarke & Oberprieler). We propose the name Zimmiorhinus as a replacement name for Elwoodius Clarke & Oberprieler and Burmophyletis as a replacement name for Platychirus Clarke & Oberprieler.

7 September 2025 in Ecology and Evolution
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Journal Article
Open access
YLYan-Da Li
Yan-Da Li
DCDave Clarke
Dave Clarke
ANAlfred F. Newton
Alfred F. Newton
Diying HuangDiying Huang
Diying Huang
Chenyang CaiChenyang Cai
Chenyang Cai
We describe and illustrate Zavoticus yini gen. et sp. nov., a fossil beetle of Euaesthetinae (Staphylinidae) from mid‐Cretaceous Kachin amber, and evaluate its phylogenetic placement based on morphological characters. Zavoticus shares several key features with the Octavius generic group, including a distinct metendosternal stalk, two pairs of parasclerites on abdominal segments IV–VI, and apically attached abdominal intersegmental membranes. It differs from the two extant genera of the Octavius generic group, Octavius and Protopristus, primarily by having only a very weak and indistinct dorsal nuchal depression. The discovery of Zavoticus adds to the limited but growing fossil record of Euaesthetinae and provides new insight into the early diversification of this group.