Sophia Y Wang

Dr. Sophia Y Wang

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2023 in JAMA Network Open
Verified
Journal Article
Open access
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IBIsaac A. Bernstein
Isaac A. Bernstein
YZYouchen (Victor) Zhang
Youchen (Victor) Zhang
DGDevendra Govil
Devendra Govil
IMIyad Majid
Iyad Majid
RCRobert T. Chang
Robert T. Chang
SWSophia Y Wang
Sophia Y Wang
In recent years, large language models (LLMs) have revolutionized natural language processing, helping computers to interact with text and spoken words just like humans, resulting in the creation of the chatbot. These models, including bidirectional encoder representations from transformers (BERT) and generative pretrained transformer 3 (GPT-3), are trained on massive amounts of text data and excel at natural language processing tasks such as text summarization or responding to queries.1,2 They have been used for a wide range of applications in health care, including predicting length of postsurgical hospital stay, captioning medical images, summarizing radiology reports, and named entity recognition of electronic health record notes.3-6

12 February 2022 in Ophthalmology Science
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Journal Article
Open access
SWSophia Y Wang
Sophia Y Wang
BTBenjamin Tseng
Benjamin Tseng
THTina Hernandez-Boussard
Tina Hernandez-Boussard
Advances in artificial intelligence have produced a few predictive models in glaucoma, including a logistic regression model predicting glaucoma progression to surgery. However, uncertainty exists regarding how to integrate the wealth of information in free-text clinical notes. The purpose of this study was to predict glaucoma progression requiring surgery using deep learning (DL) approaches on data from electronic health records (EHRs), including features from structured clinical data and from natural language processing of clinical free-text notes. Development of DL predictive model in an observational cohort. Adult patients with glaucoma at a single center treated from 2008 through 2020. Ophthalmology clinical notes of patients with glaucoma were identified from EHRs. Available structured data included patient demographic information, diagnosis codes, prior surgeries, and clinical information including intraocular pressure, visual acuity, and central corneal thickness. In addition, words from patients’ first 120 days of notes were mapped to ophthalmology domain-specific neural word embeddings trained on PubMed ophthalmology abstracts. Word embeddings and structured clinical data were used as inputs to DL models to predict subsequent glaucoma surgery. Evaluation metrics included area under the receiver operating characteristic curve (AUC) and F1 score, the harmonic mean of positive predictive value, and sensitivity on a held-out test set. Seven hundred forty-eight of 4512 patients with glaucoma underwent surgery. The model that incorporated both structured clinical features as well as input features from clinical notes achieved an AUC of 73% and F1 of 40%, compared with only structured clinical features, (AUC, 66%; F1, 34%) and only clinical free-text features (AUC, 70%; F1, 42%). All models outperformed predictions from a glaucoma specialist’s review of clinical notes (F1, 29.5%). We can successfully predict which patients with glaucoma will need surgery using DL models on EHRs unstructured text. Models incorporating free-text data outperformed those using only structured inputs. Future predictive models using EHRs should make use of information from within clinical free-text notes to improve predictive performance. Additional research is needed to investigate optimal methods of incorporating imaging data into future predictive models as well.

1 July 2025 in Nature Communications
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Journal Article
Open access
MWMeng Wang
Meng Wang
TLTian Lin
Tian Lin
ALAidi Lin
Aidi Lin
KYKai Yu
Kai Yu
YPYuanyuan Peng
Yuanyuan Peng
HFHuazhu Fu
Huazhu Fu
Previous foundation models for fundus images were pre-trained with limited disease categories and knowledge base. Here we introduce RetiZero, a vision-language model that incorporates knowledge from over 400 fundus diseases. The model is pre-trained on 341,896 fundus images with accompanying text descriptions gathered from diverse sources across multiple ethnicities and countries. RetiZero demonstrates exceptional performance across various downstream tasks including zero-shot disease recognition, image-to-image retrieval, clinical diagnosis assistance, few-shot fine-tuning, and cross-domain disease identification. In zero-shot scenarios, it achieves Top-5 accuracies of 0.843 for 15 diseases and 0.756 for 52 diseases, while for image-to-image retrieval, it scores 0.950 and 0.886 respectively. Notably, RetiZero's Top-3 zero-shot performance exceeds the average diagnostic accuracy of 19 ophthalmologists from Singapore, China, and the United States. The model particularly enhances clinicians' ability to diagnose rare fundus conditions, highlighting its potential value for integration into clinical settings where diverse eye diseases are encountered.

2 March 2022 in Translational Vision Science & Technology
Verified
Journal Article
Open access
PDF file
WHWendeng Hu
Wendeng Hu
SWSophia Y Wang
Sophia Y Wang
Purpose: We evaluated the use of massive transformer-based language models to predict glaucoma progression requiring surgery using ophthalmology clinical notes from electronic health records (EHRs). Methods: Ophthalmology clinical notes for 4512 glaucoma patients at a single center from 2008 to 2020 were identified from the EHRs. Four different pre-trained Bidirectional Encoder Representations from Transformers (BERT)-based models were fine-tuned on ophthalmology clinical notes from the patients’ first 120 days of follow-up for the task of predicting which patients would require glaucoma surgery. Models were evaluated with standard metrics, including area under the receiver operating characteristic curve (AUROC) and F1 score. Results: Of the patients, 748 progressed to require glaucoma surgery (16.6%). The original BERT model had the highest AUROC (73.4%; F1 = 45.0%) for identifying these patients, followed by RoBERTa, with an AUROC of 72.4% (F1 = 44.7%); DistilBERT, with an AUROC of 70.2% (F1 = 42.5%); and BioBERT, with an AUROC of 70.1% (F1 = 41.7%). All models had higher F1 scores than an ophthalmologist's review of clinical notes (F1 = 29.9%). Conclusions: Using transfer learning with massively pre-trained BERT-based models is a natural language processing approach that can access the wealth of clinical information stored within ophthalmology clinical notes to predict the progression of glaucoma. Future work to improve model performance can focus on integrating structured or imaging data or further tailoring the BERT models to ophthalmology domain–specific text. Translational Relevance: Predictive models can provide the basis for clinical decision support tools to aid clinicians in identifying high- or low-risk patients to maximally tailor glaucoma treatments.

13 November 2021 in American Journal of Ophthalmology
Verified
Journal Article
Closed access
GBGala Beykin
Gala Beykin
LSLaurel Stell
Laurel Stell
MHMuhammad Sohail Halim
Muhammad Sohail Halim
MNMariana Nuñez
Mariana Nuñez
LPLilia Popova
Lilia Popova
JGJeffrey L. Goldberg
Jeffrey L. Goldberg

9 June 2020 in Ophthalmology Glaucoma
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Journal Article
Closed access
SWSophia Y Wang
Sophia Y Wang
AAAmee D. Azad
Amee D. Azad
SLShan C. Lin
Shan C. Lin
THTina Hernandez-Boussard
Tina Hernandez-Boussard
SPSuzann Pershing
Suzann Pershing