Artificial hybrid breeding can optimize parental traits to cultivate excellent hybrids with enhanced economic value. In this study, we investigated the growth performance and transcriptomes of Gymnocypris przewalskii (♀) and Gymnocypris eckloni (♂) and their F1 hybrid fishes. Hatched individuals of G. przewalskii (GP) and G. eckloni (GE) of the same size and their F1 hybrids (GH) were separately cultured for eight months in three cement tanks (n = 3). The growth indexes were measured, which showed that the growth rate of the groups was GE > GH > GP, while the survival rate was GH > GE > GP. The RNA-Seq data analysis of the muscles from the three Gymnocypris fish strains revealed that gene transcription has a significant impact on F1 hybrid fish and its parents. The differentially expressed genes (DEGs) in GH show less differences with GP, but more with GE. qRT-PCR was used to confirm the expression profiles of the chosen DEGs, and the results showed positive correlations with the RNA-seq data. KEGG enrichment results indicated that the DEGs were related to a variety of molecular functions, such as glycolysis/gluconeogenesis, arachidonic acid formation, citrate cycle, and the MAPK, PI3K-Akt, or mTOR signal pathways. Subsequent analysis indicated that there may be a significant correlation between the differential expression of IGF2 and a difference in the growth of GE and GP.

Hybrid breeding is an effective approach to generate better varieties and prevent variety degradation. The present study investigated the metabolic changes underlying growth superiority in the novel Gymnocypris hybrid (GH), Gymnocypris przewalskii ♀ (GP) × G. eckloni ♂ (GE). The ranking of survival rate was GH > GE > GP, whereas the ranking of growth rate was GE > GH > GP. A proteomic analysis of G. hybrid and its parents was conducted to elucidate the metabolic changes underlying growth superiority. Identified pathways were primarily associated with amino acid, carbohydrate, energy, lipid, and nucleotide metabolism. These metabolic pathways, which are closely associated with growth, are controlled through regulation of the expression of numerous proteins, including adenosylhomocysteinase, hydroxypyruvate reductase, glutamate-cysteine ligase, L-lactate dehydrogenase, creatine kinase, GDP-L-fucose synthase, pyruvate kinase, fructose-bisphosphate aldolase, carbonic anhydrase, phosphopyruvate hydratase, phosphoglycerate kinase, S-(hydroxymethyl) glutathione dehydrogenase, and AMP deaminase. Real-time PCR assays showed that the level of mRNA expression of differentially expressed genes was positively correlated with growth. Proteins that were differentially expressed in GH exhibited fewer differences from GP and more differences from GE. These data are the first to reveal the molecular mechanism whereby growth is regulated in G. hybrid and its parents at the protein level. The study thus provides important information for genetic breeding and improvement of G. hybrid for aquaculture production.

Extreme high-temperature events driven by global climate change are occurring with increasing frequency, posing a serious threat to the stability of aquatic ecosystems. The Tibetan schizothoracin (Gymnocypris eckloni), a cold-water fish species endemic to the Qinghai–Tibet Plateau, is highly sensitive to temperature fluctuations and serves as an ideal model for studying the effects of climate change on fish. As a key organ for fish to perceive environmental changes, the gills’ comprehensive response mechanism has not yet been fully elucidated. This study investigated the effects of acute heat stress on the gill tissue of G. eckloni. The results showed that acute heat stress caused severe histopathological damage in the gills, including lamellar curling, epithelial cell detachment, and edema, with a significant increase in apoptosis. Biochemical analysis revealed elevated levels of cortisol, glucose, and ATPase activity in serum, as well as increased MDA content and CAT activity in the gills. Transcriptomic analysis identified 2304 DEGs. Upregulated DEGs were significantly enriched in pathways related to inflammatory response, TNF signaling, ferroptosis, and apoptosis, while downregulated DEGs were primarily involved in peroxisome metabolism, cell cycle, and steroid biosynthesis. This study confirms that acute heat stress induces structural damage and functional impairment in the gills by activating inflammatory and apoptotic pathways and disrupting redox homeostasis. It elucidates the immediate molecular and physiological responses of G. eckloni gills to acute heat stress. Follow-up experiments will be conducted at multiple time points, across different temperature gradients, and under chronic stress conditions to gain a more comprehensive understanding of the adaptive potential of high-altitude fish to climate warming, thereby providing a scientific basis for the development of conservation strategies.

Aeromonas veronii (A. veronii) is ubiquitous in aquatic habitats and infects diverse aquatic animals, causing high mortality and heavy economic losses in aquaculture. In this study, we initially isolated a Gram-negative bacterium (Pv001) from the visceral organs of naturally diseased Paracobitis variegatus. Based on morphological, biochemical, and 16S rRNA and gyrB gene sequence analysis, the isolated strain was accurately determined to be A. veronii. Virulence gene screening showed that the strain Pv001 carried multiple virulence genes, including Acg, Act, Alt, Exu, Lip, and Omp. In vitro antimicrobial evaluations revealed that ceftriaxone, chloramphenicol, ciprofloxacin, and tetracycline displayed significant inhibitory effects on Pv001, while ampicillin, penicillin, and lincomycin exhibited no detectable inhibitory action. The artificial challenge of Paracobitis variegatus with the isolated strain Pv001 via intraperitoneal injection reproduced the clinical signs observed in the affected farm, yielding a calculated LD₅₀ of 8.61 × 10⁵ CFU/fish. Histopathological analysis of the diseased fish indicated extensive intestinal mucosal destruction, vacuolar degeneration of liver cells, and localized necrosis, as well as a considerable number of melano-macrophage centers (MMCs) aggregating in the spleen. This study provides a scientific foundation for the prevention and control of epidemics by revealing the pathogenic features of A. veronii illness in P. variegatus.