It is now crucial to accurately monitor the state of health (SoH) of batteries in a setting where the use of electric vehicles (EVs) and renewable energy technologies is still growing. To solve this issue and evaluate the SoH, this paper makes use of deep learning technology. The suggested method incorporates voltage, current, and temperature data, which are important indications of the SoH and can potentially be obtained directly from the battery management system (BMS). Although deep neural networks (DNNs) have previously been employed for SoH estimation, our study distinguishes itself by implementing a robust, completely configurable DNN application in MATLAB/Simulink R2019a. This design enables the adjustment of activation functions, layer depth, and neuron count to adapt to different battery aging conditions. To achieve optimal performance, numerous configurations were examined, highlighting the relevance of hyperparameter setting. Our technique avoids traditional feature engineering while providing a practical, adaptive, and accurate SoH estimate framework appropriate for real-world integration. The precision of the improved model was then verified against a Li-ion battery dataset with various discharge profiles given by the national aeronautics and space administration (NASA). The collected findings revealed that the proposed method is more accurate and robust than other regularly used models. The DNN model achieved a Mean absolute error (MAE) of 1.433% and a Coefficient of determination of 0.99998, outperforming previous methods such as CNN-BiGRU, which reported an MAE of 2.448% in a recent publication. This study demonstrates the reliable performance of the DNN in predicting the SoH of Li-ion cells.