Detecting clouds in satellite imagery is becoming more important with increasing data availability, however many earth observation sensors are not designed for this task. In Satellite pour l’Observation de la Terre 5 (SPOT5) High Resolution Geometrical (HRG) imagery, the reflectance properties of clouds are very similar to common features on the earth’s surface, in the four available bands (green, red, near-infrared and shortwave-infrared). The method presented here, called SPOTCASM (SPOT cloud and shadow masking), deals with this problem by using a series of novel image processing steps, and is the first cloud masking method to be developed specifically for SPOT5 HRG imagery. It firstly detects marker pixels using image specific threshold values, and secondly grows segments from these markers using the watershed-from-markers transform. The threshold values are defined as lines in a 2-dimensional histogram of the image surface reflectance values, calculated from two bands. Sun and satellite angles, and the similarity between the area of cloud and shadow objects are used to test their validity. SPOTCASM was tested on an archive of 313 cloudy images from across New South Wales (NSW), Australia, with 95% of images having an overall accuracy greater than 85%. Commission errors due to false clouds (such as highly reflective ground), and false shadows (such as a dark water body) can be high, as can omission errors due to thin cloud that is very similar to the underlying ground surface. These errors can be quickly reduced through manual editing, which is the current method being employed in the operational environment in which SPOTCASM is implemented. The method is being used to mask clouds and shadows from an expanding archive of imagery across NSW, facilitating environmental change detection.

A new water index for SPOT5 High Resolution Geometrical (HRG) imagery normalized to surface reflectance, called the linear discriminant analysis water index (LDAWI), was created using training data from New South Wales (NSW), Australia and the multivariate statistical method of linear discriminant analysis classification. The index uses all four image bands, and is better at separating water and non-water pixels than the two commonly used variations of the normalized difference water index (NDWI), which each only use two image bands. Compared across 2,400 validation pixels, from six images spanning four years, the LDAWI attained an overall accuracy of 98%, a producer’s accuracy for water of 100%, and a user’s accuracy for water of 97%. These accuracy measures increase to 99%, 100% and 98% if cloud shadow and topographic shadow masks are applied to the imagery. The NDWI achieved consistently lower accuracies, with the NDWI calculated from the green and shortwave infrared (IR) bands performing slightly better (91% overall accuracy) than the NDWI calculated from the green and near IR bands (89% overall accuracy). The LDAWI is now being routinely used on an archive of over 2,000 images from across NSW, as part of an operational environmental monitoring program.

Non‐forest ecosystems, dominated by shrubs, grasses and herbaceous plants, provide ecosystem services including carbon sequestration and forage for grazing, and are highly sensitive to climatic changes. Yet these ecosystems are poorly represented in remotely sensed biomass products and are undersampled by in situ monitoring. Current global change threats emphasize the need for new tools to capture biomass change in non‐forest ecosystems at appropriate scales. Here we developed and deployed a new protocol for photogrammetric height using unoccupied aerial vehicle (UAV) images to test its capability for delivering standardized measurements of biomass across a globally distributed field experiment. We assessed whether canopy height inferred from UAV photogrammetry allows the prediction of aboveground biomass (AGB) across low‐stature plant species by conducting 38 photogrammetric surveys over 741 harvested plots to sample 50 species. We found mean canopy height was strongly predictive of AGB across species, with a median adjusted R² of 0.87 (ranging from 0.46 to 0.99) and median prediction error from leave‐one‐out cross‐validation of 3.9%. Biomass per‐unit‐of‐height was similar within but different among, plant functional types. We found that photogrammetric reconstructions of canopy height were sensitive to wind speed but not sun elevation during surveys. We demonstrated that our photogrammetric approach produced generalizable measurements across growth forms and environmental settings and yielded accuracies as good as those obtained from in situ approaches. We demonstrate that using a standardized approach for UAV photogrammetry can deliver accurate AGB estimates across a wide range of dynamic and heterogeneous ecosystems. Many academic and land management institutions have the technical capacity to deploy these approaches over extents of 1–10 ha⁻¹. Photogrammetric approaches could provide much‐needed information required to calibrate and validate the vegetation models and satellite‐derived biomass products that are essential to understand vulnerable and understudied non‐forested ecosystems around the globe.

Tree cover maps are used for many purposes, such as vegetation mapping, habitat connectivity and fragmentation studies. Small remnant patches of native vegetation are recognised as ecologically important, yet they are underestimated in remote sensing products derived from Landsat. High spatial resolution sensors are capable of mapping small patches of trees, but their use in large-area mapping has been limited. In this study, multi-temporal Satellite pour l’Observation de la Terre 5 (SPOT5) High Resolution Geometrical data was pan-sharpened to 5 m resolution and used to map tree cover for the Australian state of New South Wales (NSW), an area of over 800,000 km². Complete coverages of SPOT5 panchromatic and multispectral data over NSW were acquired during four consecutive summers (2008–2011) for a total of 1256 images. After pre-processing, the imagery was used to model foliage projective cover (FPC), a measure of tree canopy density commonly used in Australia. The multi-temporal imagery, FPC models and 26,579 training pixels were used in a binomial logistic regression model to estimate the probability of each pixel containing trees. The probability images were classified into a binary map of tree cover using local thresholds, and then visually edited to reduce errors. The final tree map was then attributed with the mean FPC value from the multi-temporal imagery. Validation of the binary map based on visually assessed high resolution reference imagery revealed an overall accuracy of 88% (±0.51% standard error), while comparison against airborne lidar derived data also resulted in an overall accuracy of 88%. A preliminary assessment of the FPC map by comparing against 76 field measurements showed a very good agreement (r² = 0.90) with a root mean square error of 8.57%, although this may not be representative due to the opportunistic sampling design. The map represents a regionally consistent and locally relevant record of tree cover for NSW, and is already widely used for natural resource management in the state.