Ngo Thi Duy Ngoc

Dr. Ngo Thi Duy Ngoc


Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
30 August 2025 in Marine Drugs
Verified
Journal Article
Open access
PDF file
OKOlga Khmel
Olga Khmel
AYAnton N. Yurchenko
Anton N. Yurchenko
PTPhan Trinh
Phan Trinh
NNNgo Thi Duy Ngoc
Ngo Thi Duy Ngoc
TRANG VO THI DIEUTRANG VO THI DIEU
TRANG VO THI DIEU
Ekaterina YurchenkoEkaterina Yurchenko
Ekaterina Yurchenko
The aim of this study was to investigate the metabolites in Aspergillus subramanianii 1901NT-1.40.2 extract using UPLC-MS, isolate and elucidate the structure of individual compounds, and study the antimicrobial and cytotoxic activities of the isolated compounds. The structures of two previously unreported ergostane triterpenoid aspersubrin A (1) and pyrazine alkaloid ochramide E (2) were established using NMR and HR ESI-MS. The absolute configuration of 1 was determined using quantum chemical calculations. Moreover, the known polyketides sclerolide (3) and sclerin (4); the indolediterpene alkaloid 10,23-dihydro-24,25-dehydroaflavinine (5); the bis-indolyl benzenoid alkaloids kumbicin D (6), asterriquinol D dimethyl ether (7), petromurin C (8); and the cyclopentenedione asterredione (9) were isolated. The effects of compounds 3-9 on the growth and biofilm formation of the yeast-like fungus Candida albicans and the bacteria Staphylococcus aureus and Escherichia coli were investigated. Compounds 5 and 6 inhibited C. albicans growth and biofilm formation at an IC50 of 7–10 µM. Moreover, the effects of compounds 3-9 on non-cancerous H9c2 cardiomyocytes, HaCaT keratinocytes, MCF-10A breast epithelial cells, and breast cancer MCF-7 and MDA-MB-231 cells were also investigated. Compound 8 (10 µM) significantly decreased the viability of MCF-7 cells, inhibited colony formation, and arrested cell cycle progression and proliferation in monolayer culture. Moreover, 8 significantly decreased the area of MCF-7 3D spheroids by approximately 30%. A competitive test with 4-hydroxytamoxyfen and molecular docking showed that estrogen receptors (ERβ more than ERα) were involved in the anticancer effect of petromurin C (8).

27 October 2026 in Preprints.org
Verified
Preprint
Open access
PDF file
Ekaterina YurchenkoEkaterina Yurchenko
Ekaterina Yurchenko
PTPhan Trinh
Phan Trinh
OKOlga Khmel
Olga Khmel
NNNgo Thi Duy Ngoc
Ngo Thi Duy Ngoc
TRANG VO THI DIEUTRANG VO THI DIEU
TRANG VO THI DIEU
AYAnton N. Yurchenko
Anton N. Yurchenko
Background: Mycophenolic acid (MPA) is an IMPDH inhibitor used clinically as an immunosuppressant, but its antiproliferative potency is offset by immune toxicity. We previously identified marine-derived MPA analogues as candidate estrogen receptor α (ERα) ligands. Here, we tested whether penicacid G (PG), a C-4′-oxidized MPA derivative from the marine fungus Penicillium sp. 1901NT-2.53.1, exerts ERα-dependent antiproliferative activity against ER-positive breast cancer cells. Methods: Molecular targets were predicted with TargetNet and OCHEM QSAR models; ERα binding was modeled by docking (PDB 3UUD) and 100 ns molecular dynamics. Cytotoxicities of PG, 4′-hydroxy-MPA, and MPA were determined in MCF-7, MDA-MB-231, H9c2, and MonoMac-1 cells. ERα dependence was interrogated by 4-hydroxytamoxifen (4-OHT) competition, clonogenic assay, ERα monomer/dimer analysis, qPCR of ER-regulated transcripts, cell-cycle flow cytometry, and LINCS L1000 analysis. Results: PG docked into the ERα ligand-binding pocket (−7.7 kcal/mol) and remained stably bound over 100 ns. PG reduced MCF-7 viability at 1 μM (−19.4%) without affecting MDA-MB-231, H9c2, or MonoMac-1 cells (IC50 > 100 μM) and inhibited MCF-7 colony formation (IC50 3.1 μM). Its effect was attenuated by 4-OHT and accompanied by altered ERα monomer/dimer ratios, rapid PHB2 upregulation, and IGFBP4 suppression, indicating ERα pathway engagement. In contrast, MPA inhibited both cancer cell lines, was not blocked by 4-OHT, and its LINCS L1000 profile suggests indirect antagonism of ER-dependent transcription secondary to nucleotide depletion. Conclusions: Penicacid G is an ERα-engaging MPA analogue that selectively impairs ER-positive breast cancer cell proliferation while sparing monocytic immune cells, representing a promising ERα-targeted lead scaffold.