Understanding and predicting how biological communities respond to climate change is critical for assessing biodiversity vulnerability and guiding conservation efforts. Glacier‐ and snow‐fed rivers are one of the most sensitive ecosystems to climate change, and can provide early warning of wider‐scale changes. These rivers are frequently used for hydropower production but there is minimal understanding of how biological communities are influenced by climate change in a context of flow regulation. This study sheds light on this issue by disentangling structural (water temperature preference, taxonomic composition, alpha, beta and gamma diversities) and functional (functional traits, diversity, richness, evenness, dispersion and redundancy) effects of climate change in interaction with flow regulation in the Alps. For this, we compared environmental and aquatic invertebrate data collected in the 1970s and 2010s in regulated and unregulated alpine catchments. We hypothesized a replacement of cold‐adapted species by warming‐tolerant ones, high temporal and spatial turnover in taxa and trait composition, along with reduced taxonomic and functional diversities in consequence of climate change. We expected communities in regulated rivers to respond more drastically due to additive or synergistic effects between flow regulation and climate change. We found divergent structural but convergent functional responses between free‐flowing and regulated catchments. Although cold‐adapted taxa decreased in both of them, greater colonization and spread of thermophilic species was found in the free‐flowing one, resulting in higher spatial and temporal turnover. Since the 1970s, taxonomic diversity increased in the free flowing but decreased in the regulated catchment due to biotic homogenization. Colonization by taxa with new functional strategies (i.e. multivoltine taxa with small body size, resistance forms, aerial dispersion and reproduction by clutches) increased functional diversity but decreased functional redundancy through time. These functional changes could jeopardize the ability of aquatic communities facing intensification of ongoing climate change or new anthropogenic disturbances.

The investigation of flow–ecology relationships constitutes the basis for the development of environmental flow criteria. The need to understand hydrology–ecology linkages in natural systems has increased owing to the prospect of climate change and flow regime management, especially in water‐scarce areas such as Mediterranean basins. Our research quantified the macroinvertebrate community response at family, genus and species level to natural flow regime dynamics in freshwater streams of a Mediterranean semiarid basin (Segura River, SE Spain) and identified the flow components that influence the composition and richness of biotic assemblages. Flow stability and minimum flows were the principal hydrological drivers of macroinvertebrate assemblages, whereas the magnitude of average and maximum flows had a limited effect. Perennial stable streams were characterized by flow sensitive lotic taxa (Ephemeroptera, Plecoptera and Trichoptera) and intermittent streams by predominately lentic taxa (Odonata, Coleoptera, Heteroptera and Diptera). Relatively minor biological changes were recorded for intermediate flow regime classes along a gradient of flow stability. Seasonal variation and minimum flows are key hydrological components that need to be considered for river management and environmental flows in the Segura River basin and other Mediterranean basins. The anthropogenic modification of these parameters, due to both human activities and climate change, would probably lead to significant changes in the structure and composition of communities in perennial stable streams. This would be characterized by a reduction of flow sensitive Ephemeroptera, Plecoptera and Trichoptera taxa and an increase in more resilient Odonata, Coleoptera, Heteroptera and Diptera taxa. Copyright © 2012 John Wiley & Sons, Ltd.