Rui S. Oliveira

Dr. Rui S. Oliveira

Centre for Functional Ecology-Science for People & the Planet, Department of Life Sciences, University of Coimbra, 3000-456 Coimbra, Portugal

Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 June 2016 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
YMYing Ma
Ying Ma
Rui S. OliveiraRui S. Oliveira
Rui S. Oliveira
Helena Maria De Oliveira FreitasHelena Maria De Oliveira Freitas
Helena Maria De Oliveira Freitas
CZChang Zhang
Chang Zhang
Plants and microbes coexist or compete for survival and their cohesive interactions play a vital role in adapting to metalliferous environments, and can thus be explored to improve microbe-assisted phytoremediation. Plant root exudates are useful nutrient and energy sources for soil microorganisms, with whom they establish intricate communication systems. Some beneficial bacteria and fungi, acting as plant growth promoting microorganisms (PGPM), may alleviate metal phytotoxicity and stimulate plant growth indirectly via the induction of defense mechanisms against phytopathogens, and/or directly through the solubilization of mineral nutrients (nitrogen, phosphate, potassium, iron, etc.), production of plant growth promoting substances (e.g. phytohormones), and secretion of specific enzymes (e.g. 1-aminocyclopropane-1-carboxylate deaminase). PGPM can also change metal bioavailability in soil through various mechanisms such as acidification, precipitation, chelation, complexation, and redox reactions. This review presents the recent advances and applications made hitherto in understanding the biochemical and molecular mechanisms of plant-microbe interactions and their role in the major processes involved in phytoremediation, such as heavy metal detoxification, mobilization, immobilization, transformation, transport and distribution.

6 November 2019 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
IRInês de Rocha
Inês de Rocha
YMYing Ma
Ying Ma
PSPablo Souza-Alonso
Pablo Souza-Alonso
MVMiroslav Vosátka
Miroslav Vosátka
Helena Maria De Oliveira FreitasHelena Maria De Oliveira Freitas
Helena Maria De Oliveira Freitas
Rui S. OliveiraRui S. Oliveira
Rui S. Oliveira
Plant beneficial microbes (PBMs), such as plant growth-promoting bacteria, rhizobia, arbuscular mycorrhizal fungi, and Trichoderma, can reduce the use of agrochemicals and increase plant yield, nutrition, and tolerance to biotic–abiotic stresses. Yet, large-scale applications of PBM have been hampered by the high amounts of inoculum per plant or per cultivation area needed for successful colonization and consequently the economic feasibility. Seed coating, a process that consists in covering seeds with low amounts of exogenous materials, is gaining attention as an efficient delivery system for PBM. Microbial seed coating comprises the use of a binder, in some cases a filler, mixed with inocula, and can be done using simple mixing equipment (e.g., cement mixer) or more specialized/sophisticated apparatus (e.g., fluidized bed). Binders/fillers can be used to extend microbial survival. The most reported types of seed coating are seed dressing, film coating, and pelleting. Tested in more than 50 plant species with seeds of different dimensions, forms, textures, and germination types (e.g., cereals, vegetables, fruits, pulses, and other legumes), seed coating has been studied using various species of plant growth-promoting bacteria, rhizobia, Trichoderma, and to a lesser extent mycorrhizal fungi. Most of the studies regarding PBM applied via seed coating are aimed at promoting crop growth, yield, and crop protection against pathogens. Studies have shown that coating seeds with PBM can assist crops in improving seedling establishment and germination or achieving high yields and food quality, under reduced chemical fertilization. The right combination of biological control agents applied via seed coating can be a powerful tool against a wide number of diseases and pathogens. Less frequently, studies report seed coating being used for adaptation and protection of crops under abiotic stresses. Notwithstanding the promising results, there are still challenges mainly related with the scaling up from the laboratory to the field and proper formulation, including efficient microbial combinations and coating materials that can result in extended shelf-life of both seeds and coated PBM. These limitations need to be addressed and overcome in order to allow a wider use of seed coating as a cost-effective delivery method for PBM in sustainable agricultural systems.

1 June 2015 in Journal of Environmental Management
Verified
Journal Article
Closed access
YMYing Ma
Ying Ma
Rui S. OliveiraRui S. Oliveira
Rui S. Oliveira
FNFengjiao Nai
Fengjiao Nai
MRMani Rajkumar
Mani Rajkumar
YLYongming Luo
Yongming Luo
HFHelena Freitas
Helena Freitas

1 November 2019 in Journal of Hazardous Materials
Verified
Journal Article
Closed access
YMYing Ma
Ying Ma
MRMani Rajkumar
Mani Rajkumar
Rui S. OliveiraRui S. Oliveira
Rui S. Oliveira
CZChang Zhang
Chang Zhang
Helena Maria De Oliveira FreitasHelena Maria De Oliveira Freitas
Helena Maria De Oliveira Freitas

17 January 2024 in Sustainability
Verified
Journal Article
Open access
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RSRui Jorge Pinto de Sousa
Rui Jorge Pinto de Sousa
Luís BragançaLuís Bragança
Luís Bragança
Manuela V. da SilvaManuela V. da Silva
Manuela V. da Silva
Rui S. OliveiraRui S. Oliveira
Rui S. Oliveira
The global food system is currently facing significant challenges that make it unsustainable and environmentally harmful. These challenges not only threaten food security but also have severe negative impacts on the environment. Efforts have been made to reform agrifood systems and align them with the built environment, but emerging obstacles have revealed the weaknesses in these systems, particularly in less self-sufficient countries. This review outlines the primary environmental problems associated with global agrifood systems and the challenges in promoting food security. It emphasizes that the increasing global population and urbanization need rational and equitable changes in food systems, including production, distribution, storage, and consumption. These changes should aim to minimize environmental impacts by protecting and efficiently utilizing natural resources such as air, water, soil, and biodiversity, reducing food loss and waste, and mitigating pollution that contributes to ecosystem degradation and climate change. In this context, hydroponics emerges as a sustainable, plant-based food production technique that can be employed as a solution in urban areas. It can be implemented in domestic microproduction systems, serving as a complementary alternative to conventional food production methods. This study also provides insights into the challenges that need to be addressed in order to enhance home hydroponic systems. The integration of hydroponics into urban food production offers the potential to tackle both food security and environmental sustainability issues, providing a path toward more resilient and efficient food systems.

13 July 2015 in Journal of Toxicology and Environmental Health, Part A
Verified
Journal Article
Open access
YMYing Ma
Ying Ma
Rui S. OliveiraRui S. Oliveira
Rui S. Oliveira
LWLonghua Wu
Longhua Wu
YLYongming Luo
Yongming Luo
MRMani Rajkumar
Mani Rajkumar
Helena Maria De Oliveira FreitasHelena Maria De Oliveira Freitas
Helena Maria De Oliveira Freitas
A plant growth-promoting bacterial (PGPB) strain SC2b was isolated from the rhizosphere of Sedum plumbizincicola grown in lead (Pb)/zinc (Zn) mine soils and characterized as Bacillus sp. based on (1) morphological and biochemical characteristics and (2) partial 16S ribosomal DNA sequencing analysis. Strain SC2b exhibited high levels of resistance to cadmium (Cd) (300 mg/L), Zn (730 mg/L), and Pb (1400 mg/L). This strain also showed various plant growth-promoting (PGP) features such as utilization of 1-aminocyclopropane-1-carboxylate, solubilization of phosphate, and production of indole-3-acetic acid and siderophore. The strain mobilized high concentration of heavy metals from soils and exhibited different biosorption capacity toward the tested metal ions. Strain SC2b was further assessed for PGP activity by phytagar assay with a model plant Brassica napus. Inoculation of SC2b increased the biomass and vigor index of B. napus. Considering such potential, a pot experiment was conducted to assess the effects of inoculating the metal-resistant PGPB SC2b on growth and uptake of Cd, Zn and Pb by S. plumbizincicola in metal-contaminated agricultural soils. Inoculation with SC2b elevated the shoot and root biomass and leaf chlorophyll content of S. plumbizincicola. Similarly, plants inoculated with SC2b demonstrated markedly higher Cd and Zn accumulation in the root and shoot system, indicating that SC2b enhanced Cd and Zn uptake by S. plumbizincicola through metal mobilization or plant-microbial mediated changes in chemical or biological soil properties. Data demonstrated that the PGPB Bacillus sp. SC2b might serve as a future biofertilizer and an effective metal mobilizing bioinoculant for rhizoremediation of metal polluted soils.