The coupling of the ionosphere to processes from below remains an elusive and difficult problem, as rapidly changing external drivers from above mask variations related to lower atmospheric sources. Here we use superposition of unique circumstances, current deep solar minimum and a record‐breaking stratospheric warming event, to gain new insights into causes of ionospheric perturbations. We show large (50–150%) persistent variations in the low‐latitude ionosphere (200–1000 km) that occur several days after a sudden warming event in the high‐latitude winter stratosphere (∼30 km). We rule out solar irradiance and geomagnetic activity as explanations of the observed variation. Using a general circulation model, we interpret these observations in terms of large changes in atmospheric tides from their nonlinear interaction with planetary waves that are strengthened during sudden warmings. We anticipate that further understanding of the coupling processes with planetary waves, accentuated during the stratospheric sudden warming events, has the potential of enabling the forecast of low‐latitude ionospheric weather up to several days in advance.

We present strong evidence that during the January 2008 minor sudden stratospheric warming (SSW) event, the equatorial vertical E × B drifts exhibit a unique and distinctive daytime pattern. We do not think one event causes the other, however both events might be related through the global effects of planetary waves. The drifts were measured by the Jicamarca Incoherent scatter radar located under the magnetic equator. We have observed an anomalous temporal variation of the vertical E × B drifts during the minor SSW event, showing a semidiurnal variation with very large amplitudes lasting for several days. Large differences in the E × B drifts were observed during a period of large increase of temperature and a large decrease of mean zonal wind, in the high latitude stratosphere (60°–90°N). This high correlation is an unexpected finding which might shed new light on sources and mechanisms of quiet‐time ionospheric variability.