Furfural, acetic acid, and sulfates are found in the hemicellulose (HMC) fraction of lignocellulosic biomass. Separation of furfural, acetic acid, and sulfates from monosaccharides by four nanofiltration (NF) membranes was evaluated with a model solution of glucose, xylose, furfural, acetic acid, and sulfates. Results showed that Alfa Laval NF99HF is the most promising membrane to purify monosaccharides, with the retentions of xylose (85%), glucose (95%), and with the minimum sulfate retention. pH has the highest impact on the retention of all solutes and there is no significant effect of temperature on the retentions of sulphates and acetic acid. Lower pH and temperature are favored to maximize the monosaccharide retention and to remove acetic acid while retaining more furfural with the monosaccharides. Moreover, fouling tendency is maximized at lower pH and higher temperatures. According to the statistical analysis, the retentions of glucose, xylose, furfural, sulfates, and acetic acid are 95%, 90%, 20%, 88%, and 0%, respectively at pH 3 and 25 °C. The presence of sulfates favors the separation of acetic acid and furfural from monosaccharides.