Anna Cliffe

Anna Cliffe

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 September 2018 in Virology
Verified
Journal Article
Open access
JSJon B. Suzich
Jon B. Suzich
ACAnna Cliffe
Anna Cliffe
Herpes simplex virus (HSV) establishes a latent infection in peripheral neurons and can periodically reactivate to cause disease. Reactivation can be triggered by a variety of stimuli that activate different cellular processes to result in increased HSV lytic gene expression and production of infectious virus. The use of model systems has contributed significantly to our understanding of how reactivation of the virus is triggered by different physiological stimuli that are correlated with recrudescence of human disease. Furthermore, these models have led to the identification of both common and distinct mechanisms of different HSV reactivation pathways. Here, we summarize how the use of these diverse model systems has led to a better understanding of the complexities of HSV reactivation, and we present potential models linking cellular signaling pathways to changes in viral gene expression.

15 January 2017 in Journal of Virology
Verified
Journal Article
Closed access
PDF file
ACAnna Cliffe
Anna Cliffe
Angus WilsonAngus Wilson
Angus Wilson
Herpes simplex virus (HSV) establishes a latent reservoir in neurons of human peripheral nerves. In this quiescent state, the viral genome persists as a circular, histone-associated episome, and transcription of viral lytic cycle genes is largely suppressed through epigenetic processes. Periodically, latent virus undergoes reactivation whereby lytic genes are activated and viral replication occurs. In this Gem, we review recent evidence that mechanisms governing the initial transcription of lytic genes are distinct from those of de novo infection and directly link reactivation to neuronal stress response pathways. We also discuss evidence that lytic cycle gene expression can be uncoupled from the full reactivation program, arguing for a less sharply bimodal definition of latency.

22 December 2020 in eLife
Verified
Journal Article
Open access
SCSean R Cuddy
Sean R Cuddy
ASAustin R Schinlever
Austin R Schinlever
SDSara Dochnal
Sara Dochnal
PSPhilip V Seegren
Philip V Seegren
JSJon Suzich
Jon Suzich
ACAnna Cliffe
Anna Cliffe
Herpes simplex virus-1 (HSV-1) establishes a latent infection in neurons and periodically reactivates to cause disease. The stimuli that trigger HSV-1 reactivation have not been fully elucidated. We demonstrate HSV-1 reactivation from latently infected mouse neurons induced by forskolin requires neuronal excitation. Stimuli that directly induce neurons to become hyperexcitable also induced HSV-1 reactivation. Forskolin-induced reactivation was dependent on the neuronal pathway of DLK/JNK activation and included an initial wave of viral gene expression that was independent of histone demethylase activity and linked to histone phosphorylation. IL-1β is released under conditions of stress, fever and UV exposure of the epidermis; all known triggers of clinical HSV reactivation. We found that IL-1β induced histone phosphorylation and increased the excitation in sympathetic neurons. Importantly, IL-1β triggered HSV-1 reactivation, which was dependent on DLK and neuronal excitability. Thus, HSV-1 co-opts an innate immune pathway resulting from IL-1 stimulation of neurons to induce reactivation.

1 July 2021 in EMBO Reports
Verified
Journal Article
Closed access
PDF file
JSJon B Suzich
Jon B Suzich
SCSean R Cuddy
Sean R Cuddy
HBHiam Baidas
Hiam Baidas
SDSara Dochnal
Sara Dochnal
EKEugene Ke
Eugene Ke
ACAnna Cliffe
Anna Cliffe

22 June 2022 in Journal of Virology
Verified
Journal Article
Closed access
SDSara Dochnal
Sara Dochnal
HMHusain Y. Merchant
Husain Y. Merchant
ASAustin R. Schinlever
Austin R. Schinlever
ABAleksandra Babnis
Aleksandra Babnis
DDDaniel Depledge
Daniel Depledge
ACAnna Cliffe
Anna Cliffe
Herpes simplex virus-1 (HSV-1) enters a latent infection in neurons and periodically reactivates. Reactivation manifests as a variety of clinical symptoms.

27 July 2021 in Viruses
Verified
Journal Article
Open access
PDF file
SDSara Dochnal
Sara Dochnal
AFAlison K. Francois
Alison K. Francois
ACAnna Cliffe
Anna Cliffe
The Human Herpesviruses persist in the form of a latent infection in specialized cell types. During latency, the herpesvirus genomes associate with cellular histone proteins and the viral lytic genes assemble into transcriptionally repressive heterochromatin. Although there is divergence in the nature of heterochromatin on latent herpesvirus genomes, in general, the genomes assemble into forms of heterochromatin that can convert to euchromatin to permit gene expression and therefore reactivation. This reversible form of heterochromatin is known as facultative heterochromatin and is most commonly characterized by polycomb silencing. Polycomb silencing is prevalent on the cellular genome and plays a role in developmentally regulated and imprinted genes, as well as X chromosome inactivation. As herpesviruses initially enter the cell in an un-chromatinized state, they provide an optimal system to study how de novo facultative heterochromatin is targeted to regions of DNA and how it contributes to silencing. Here, we describe how polycomb-mediated silencing potentially assembles onto herpesvirus genomes, synergizing what is known about herpesvirus latency with facultative heterochromatin targeting to the cellular genome. A greater understanding of polycomb silencing of herpesviruses will inform on the mechanism of persistence and reactivation of these pathogenic human viruses and provide clues regarding how de novo facultative heterochromatin forms on the cellular genome.