Eugene V. Radchenko

Dr. Eugene V. Radchenko

orcid

Research Focus & Metrics

Academic Career Length

38Years (1989-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2005 in Journal of Computer-Aided Molecular Design
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Journal Article
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Igor V. TetkoIgor V. Tetko
Igor V. Tetko
JGJohann Gasteiger
Johann Gasteiger
RTRoberto Todeschini
Roberto Todeschini
AMAndrea Mauri
Andrea Mauri
DLDavid Livingstone
David Livingstone
VPVolodymyr V. Prokopenko
Volodymyr V. Prokopenko

10 June 2011 in Journal of Computer-Aided Molecular Design
Verified
Journal Article
Open access
PDF file
ISIurii Sushko
Iurii Sushko
SNSergii Novotarskyi
Sergii Novotarskyi
RKRobert Körner
Robert Körner
APAnil Kumar Pandey
Anil Kumar Pandey
MRMatthias Rupp
Matthias Rupp
Igor V. TetkoIgor V. Tetko
Igor V. Tetko
The Online Chemical Modeling Environment is a web-based platform that aims to automate and simplify the typical steps required for QSAR modeling. The platform consists of two major subsystems: the database of experimental measurements and the modeling framework. A user-contributed database contains a set of tools for easy input, search and modification of thousands of records. The OCHEM database is based on the wiki principle and focuses primarily on the quality and verifiability of the data. The database is tightly integrated with the modeling framework, which supports all the steps required to create a predictive model: data search, calculation and selection of a vast variety of molecular descriptors, application of machine learning methods, validation, analysis of the model and assessment of the applicability domain. As compared to other similar systems, OCHEM is not intended to re-implement the existing tools or models but rather to invite the original authors to contribute their results, make them publicly available, share them with other users and to become members of the growing research community. Our intention is to make OCHEM a widely used platform to perform the QSPR/QSAR studies online and share it with other users on the Web. The ultimate goal of OCHEM is collecting all possible chemoinformatics tools within one simple, reliable and user-friendly resource. The OCHEM is free for web users and it is available online at http://www.ochem.eu.

1 February 2016 in Russian Chemical Bulletin
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Journal Article
Closed access
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EREugene V. Radchenko
Eugene V. Radchenko
ADA. S. Dyabina
A. S. Dyabina
VPVladimir Palyulin
Vladimir Palyulin
NZN. S. Zefirov
N. S. Zefirov

19 June 2015 in Expert Opinion on Drug Discovery
Verified
Journal Article
Closed access
DODmitry Osolodkin
Dmitry Osolodkin
EREugene V. Radchenko
Eugene V. Radchenko
AOAlexey A Orlov
Alexey A Orlov
AVAndrey E Voronkov
Andrey E Voronkov
VPVladimir Palyulin
Vladimir Palyulin
NZNikolay S Zefirov
Nikolay S Zefirov
The concept of 'chemical space' reveals itself in two forms: the discrete set of all possible molecules, and multi-dimensional descriptor space encompassing all the possible molecules. Approaches based on this concept are widely used for the analysis and enumeration of compound databases, library design, and structure-activity relationships (SAR) and landscape studies. Visual representations of chemical space differ in their applicability domains and features and require expert knowledge for choosing the right tool for a particular problem. In this review, the authors present recent advances in visualization of the chemical space in the framework of current general understanding of this topic. Attention is given to such methods as van Krevelen diagrams, descriptor plots, principal components analysis (PCA), self-organizing maps (SOM), generative topographic mapping (GTM), graph and network-based approaches. Notable application examples are provided. With the growth of computational power, representations of large datasets are becoming more and more common instruments in the toolboxes of chemoinformaticians. Every scientist in the field can find the method of choice for a particular task. However, there is no universal reference representation of the chemical space currently available and expert knowledge is required.

22 January 2025 in Nature Biotechnology
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Journal Article
Open access
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MVMohammad Ghazi Vakili
Mohammad Ghazi Vakili
CGChristoph Gorgulla
Christoph Gorgulla
JSJamie Snider
Jamie Snider
ANAkshatKumar Nigam
AkshatKumar Nigam
DBDmitry Bezrukov
Dmitry Bezrukov
AZAlex Zhavoronkov
Alex Zhavoronkov
We introduce a quantum–classical generative model for small-molecule design, specifically targeting KRAS inhibitors for cancer therapy. We apply the method to design, select and synthesize 15 proposed molecules that could notably engage with KRAS for cancer therapy, with two holding promise for future development as inhibitors. This work showcases the potential of quantum computing to generate experimentally validated hits that compare favorably against classical models.

1 March 2013 in Chemico-Biological Interactions
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Journal Article
Closed access
GMGalina F. Makhaeva
Galina F. Makhaeva
EREugene V. Radchenko
Eugene V. Radchenko
VPVladimir Palyulin
Vladimir Palyulin
ERElena V. Rudakova
Elena V. Rudakova
AAAlexey Aksinenko
Alexey Aksinenko
Rudy RichardsonRudy Richardson
Rudy Richardson