José Miguel Cotes Torres

Dr. José Miguel Cotes Torres

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2009 in Genetics
Verified
Journal Article
Closed access
GCGustavo de Los Campos
Gustavo de Los Campos
Hugo NayaHugo Naya
Hugo Naya
DGDaniel Gianola
Daniel Gianola
JCJose Crossa
Jose Crossa
ALAndrés Legarra
Andrés Legarra
JTJosé Miguel Cotes Torres
José Miguel Cotes Torres
The availability of genomewide dense markers brings opportunities and challenges to breeding programs. An important question concerns the ways in which dense markers and pedigrees, together with phenotypic records, should be used to arrive at predictions of genetic values for complex traits. If a large number of markers are included in a regression model, marker-specific shrinkage of regression coefficients may be needed. For this reason, the Bayesian least absolute shrinkage and selection operator (LASSO) (BL) appears to be an interesting approach for fitting marker effects in a regression model. This article adapts the BL to arrive at a regression model where markers, pedigrees, and covariates other than markers are considered jointly. Connections between BL and other marker-based regression models are discussed, and the sensitivity of BL with respect to the choice of prior distributions assigned to key parameters is evaluated using simulation. The proposed model was fitted to two data sets from wheat and mouse populations, and evaluated using cross-validation methods. Results indicate that inclusion of markers in the regression further improved the predictive ability of models. An R program that implements the proposed model is freely available.

1 May 2011 in Crop Science
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Journal Article
Closed access
PDF file
JBJuan Burgueño
Juan Burgueño
JCJose Crossa
Jose Crossa
JTJosé Miguel Cotes Torres
José Miguel Cotes Torres
FVFelix San Vicente
Felix San Vicente
BDBiswanath Das
Biswanath Das

1 October 2011 in Ecological Modelling
Verified
Journal Article
Closed access
DRDaniel Rodríguez
Daniel Rodríguez
JCJosé Ricardo Cure
José Ricardo Cure
JTJosé Miguel Cotes Torres
José Miguel Cotes Torres
AGAndrew Paul Gutierrez
Andrew Paul Gutierrez
FCFernando Cantor
Fernando Cantor

1 July 2011 in Crop Science
Verified
Journal Article
Closed access
PDF file
JCJose Crossa
Jose Crossa
SPSergio Perez‐Elizalde
Sergio Perez‐Elizalde
DJDiego Jarquin
Diego Jarquin
JTJosé Miguel Cotes Torres
José Miguel Cotes Torres
KVKert Viele
Kert Viele
PCPaul L. Cornelius
Paul L. Cornelius

1 January 2013 in Ecological Modelling
Verified
Journal Article
Closed access
DRDaniel Rodríguez
Daniel Rodríguez
JCJosé Ricardo Cure
José Ricardo Cure
AGAndrew Paul Gutierrez
Andrew Paul Gutierrez
JTJosé Miguel Cotes Torres
José Miguel Cotes Torres
FCFernando Cantor
Fernando Cantor

1 November 2006 in Crop Science
Verified
Journal Article
Closed access
JTJosé Miguel Cotes Torres
José Miguel Cotes Torres
JCJose Crossa
Jose Crossa
ASAdhemar Sanches
Adhemar Sanches
PCPaul L. Cornelius
Paul L. Cornelius