Vertisols are cracking clayey soils that (i) usually form in alluvial lowlands where, normally, groundwater pools into aquifers; (ii) have different types of voids (due to cracking), which make flow and transport of water, solutes and gas complex; and (iii) are regarded as fertile soils in many areas. The combination of these characteristics results in the unique soil–aquifer phenomena that are highlighted and summarized in this review. The review is divided into the following four sections: (1) soil cracks as preferential pathways for water and contaminants: in this section lysimeter-to basin-scale observations that show the significance of cracks as preferential-flow paths in vertisols, which bypass matrix blocks in the unsaturated zone, are summarized. Relatively fresh-water recharge and groundwater contamination from these fluxes and their modeling are reviewed; (2) soil cracks as deep evaporators and unsaturated-zone salinity: deep sediment samples under uncultivated vertisols in semiarid regions reveal a dry (immobile), saline matrix, partly due to enhanced evaporation through soil cracks. Observations of this phenomenon are compiled in this section and the mechanism of evapoconcentration due to air flow in the cracks is discussed; (3) impact of cultivation on flushing of the unsaturated zone and aquifer salinization: the third section examines studies reporting that land-use change of vertisols from native land to cropland promotes greater fluxes through the saline unsaturated-zone matrix, eventually flushing salts to the aquifer. Different degrees of salt flushing are assessed as well as aquifer salinization on different scales, and a comparison is made with aquifers under other soils; (4) relatively little nitrate contamination in aquifers under vertisols: in this section we turn the light on observations showing that aquifers under cultivated vertisols are somewhat resistant to groundwater contamination by nitrate (the major agriculturally related groundwater problem). Denitrification is probably the main mechanism supporting this resistance, whereas a certain degree of anion-exchange capacity may have a retarding effect as well.

Pollution of groundwater by nitrate originating from irrigated fields was considered for this study. We hypothesized that under cropped conditions, low-salinity irrigation water (e.g., desalinated water) could reduce nitrate leaching below the root zone, due to two possible mechanisms: (i) decreased vertical water fluxes and (ii) increased nitrogen uptake by plant roots due to chloride–nitrate competition. The main goal of this study was to investigate this hypothesis. Considering a citrus grove, the investigation relied on three-dimensional (3-D) simulations of flow and transport in a variably saturated and spatially heterogeneous flow domain performed for three successive years. Results of the analyses suggest that the main mechanism responsible for the reduction in the nitrate leached below the root zone under irrigation with low-salinity water is the effect of the latter on the spatial distribution of the rate of water uptake by the roots. The latter, in turn, significantly reduces water content, hydraulic conductivity, and vertical velocity, and, consequently, solute mass fluxes along the soil profile. On the other hand, chloride–nitrate interaction has only a relatively small effect on the nitrate mass fluxes at relatively deep soil depths, far below the root zone, particularly when the irrigation water salinity decreases.