Izabela Madura

Dr. Izabela Madura

orcid

Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 March 2020 in Molecules
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BJBojarska Joanna
Bojarska Joanna
MRMilan Remko
Milan Remko
MBMartin Breza
Martin Breza
IMIzabela Madura
Izabela Madura
KKKrzysztof Kaczmarek
Krzysztof Kaczmarek
WWWojciech Wolf
Wojciech Wolf
The success of innovative drugs depends on an interdisciplinary and holistic approach to their design and development. The supramolecular architecture of living systems is controlled by non-covalent interactions to a very large extent. The latter are prone to extensive cooperation and like a virtuoso play a symphony of life. Thus, the design of effective ligands should be based on thorough knowledge on the interactions at either a molecular or high topological level. In this work, we emphasize the importance of supramolecular structure and ligand-based design keeping the potential of supramolecular H-bonding synthons in focus. In this respect, the relevance of supramolecular chemistry for advanced therapies is appreciated and undisputable. It has developed tools, such as Hirshfeld surface analysis, using a huge data on supramolecular interactions in over one million structures which are deposited in the Cambridge Structure Database (CSD). In particular, molecular interaction surfaces are useful for identification of macromolecular active sites followed by in silico docking experiments. Ornithine-derived compounds are a new, promising class of multi-targeting ligands for innovative therapeutics and cosmeceuticals. In this work, we present the synthesis together with the molecular and supramolecular structure of a novel ornithine derivative, namely N-α,N-δ)-dibenzoyl-(α)-hydroxymethylornithine, 1. It was investigated by modern experimental and in silico methods in detail. The incorporation of an aromatic system into the ornithine core induces stacking interactions, which are vital in biological processes. In particular, rare C=O…π intercontacts have been identified in 1. Supramolecular interactions were analyzed in all structures of ornithine derivatives deposited in the CSD. The influence of substituent was assessed by the Hirshfeld surface analysis. It revealed that the crystal packing is stabilized mainly by H…O, O…H, C…H, Cl (Br, F)…H and O…O interactions. Additionally, π…π, C-H…π and N-O…π interactions were also observed. All relevant H-bond energies were calculated using the Lippincott and Schroeder H-bond model. A library of synthons is provided. In addition, the large synthons (Long-Range Synthon Aufbau Module) were considered. The DFT optimization either in vacuo or in solutio yields very similar molecular species. The major difference with the relevant crystal structure was related to the conformation of terminal benzoyl C15-C20 ring. Furthermore, in silico prediction of the extensive physicochemical ADME profile (absorption, distribution, metabolism and excretion) related to the drug-likeness and medicinal chemistry friendliness revealed that a novel ornithine derivative 1 has the potential to be a new drug candidate. It has shown good in silico absorption and very low toxicity.

1 September 2000 in Chemistry – A European Journal
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JLJanusz Lewinski
Janusz Lewinski
JZJanusz Zachara
Janusz Zachara
PGPiotr Goś
Piotr Goś
EGElżbieta Grabska
Elżbieta Grabska
TKTomasz Kopeć
Tomasz Kopeć
IPIgor Prowotorow
Igor Prowotorow

1 December 1998 in Tetrahedron
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Journal Article
Closed access
IMIzabela Madura
Izabela Madura
TKTadeusz M. Krygowski
Tadeusz M. Krygowski
MCMichal K. Cyrański
Michal K. Cyrański

1 January 2007 in New Journal of Chemistry
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SLSergiusz Lulinski
Sergiusz Lulinski
IMIzabela Madura
Izabela Madura
JSJanusz Serwatowski
Janusz Serwatowski
HSHalina Szatylowicz
Halina Szatylowicz
JZJanusz Zachara
Janusz Zachara
Functionalized 2-formylphenylboronic acids undergo an unprecedented tautomeric rearrangement in solution to form corresponding 1,3-dihydro-1,3-dihydroxybenzo[c][2,1]oxaboroles. X-Ray analyses of selected examples revealed diverse solid-state molecular structures from a planar open form with a hydrogen-bonded carbonyl group (X = 3-F) through a twisted conformer showing a weak carbonyl–boron interaction (X = 3,5-Br2) to a cyclic oxaborole derivative (X = 3-Br). Variable-temperature 1H NMR spectroscopy was used to determine equilibrium constants as well as enthalpies and entropies of tautomerization in a mixed solvent [D6]acetone–D2O (95 : 5). A computational approach to the process by DFT (B3LYP) and MP2 methods has also been performed.

1 October 2012 in New Journal of Chemistry
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AAAgnieszka Adamczyk-Woźniak
Agnieszka Adamczyk-Woźniak
KBKrzysztof Borys
Krzysztof Borys
IMIzabela Madura
Izabela Madura
APAlicja Pawełko
Alicja Pawełko
ETEwelina Tomecka
Ewelina Tomecka
KŻKamil Żukowski
Kamil Żukowski
The pKas as well as apparent binding constants of several 3-amino-substituted benzoxaboroles with alizarin red S (ARS) and some biologically important sugars have been evaluated and compared with that of the parent aminomethylphenylboronic acids. The investigated benzoxaboroles reveal lower acidity than the corresponding boronic acids. All the studied boronic compounds display the usual order of apparent binding constant values with glucose, galactose and fructose. The X-ray structure of the model catechol ester of the morpholinylmethylphenylboronic acid has been determined. The molecules are monomeric zwitterions with a tetracoordinated boron atom. The intermolecular interactions have been described with the aid of the Hirshfeld surface analysis.

21 October 2014 in Crystal Growth & Design
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Journal Article
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IMIzabela Madura
Izabela Madura
KCKarolina Czerwińska
Karolina Czerwińska
DSDominika Sołdańska
Dominika Sołdańska