Tomotsugu Koyama

Dr. Tomotsugu Koyama

Suntory Foundation for Life Sciences
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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 August 2017 in Plant Physiology
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Journal Article
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TKTomotsugu Koyama
Tomotsugu Koyama
FSFumihiko Sato
Fumihiko Sato
MOMasaru Ohme-Takagi
Masaru Ohme-Takagi
Combinations of mutations in miR319 and TCP transcription factor genes in Arabidopsis thaliana generate cotyledon fusion and various leaf forms with a broad ran

25 November 2014 in Frontiers in Plant Science
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TKTomotsugu Koyama
Tomotsugu Koyama
Leaf senescence is the last stage of leaf development and is accompanied by cell death. In contrast to senescence in individual organisms that leads to their death, leaf senescence is associated with dynamic processes that include the translocation of nutrients from old leaves to newly developing or storage tissues within the same plant. The onset of leaf senescence is largely regulated by age and internal and external stimuli, which include the plant hormone ethylene. Earlier studies have documented the important role of ethylene in the regulation of leaf senescence. The production of ethylene coincides with the onset of leaf senescence, whereas the application of ethylene to plants induces precocious leaf senescence. Recently, many studies have described the components of ethylene signaling and biosynthetic pathways that are involved in modulating the onset of leaf senescence. Particularly, transcription factors (TFs) integrate ethylene signals with those from environmental and developmental factors to accelerate or delay leaf senescence. This review aims to discuss the regulatory cascade involving ethylene and TFs in the regulation of onset of leaf senescence.

4 May 2015 in Metabolites
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Journal Article
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HSHonoo Satake
Honoo Satake
TKTomotsugu Koyama
Tomotsugu Koyama
SBSedigheh Esmaeilzadeh Bahabadi
Sedigheh Esmaeilzadeh Bahabadi
EMErika Matsumoto
Erika Matsumoto
EOEiichiro Ono
Eiichiro Ono
Jun MurataJun Murata
Jun Murata
Lignans are structurally and functionally diverse phytochemicals biosynthesized in diverse plant species and have received wide attentions as leading compounds of novel drugs for tumor treatment and healthy diets to reduce of the risks of lifestyle-related non-communicable diseases. However, the lineage-specific distribution and the low-amount of production in natural plants, some of which are endangered species, hinder the efficient and stable production of beneficial lignans. Accordingly, the development of new procedures for lignan production is of keen interest. Recent marked advances in the molecular and functional characterization of lignan biosynthetic enzymes and endogenous and exogenous factors for lignan biosynthesis have suggested new methods for the metabolic engineering of lignan biosynthesis cascades leading to the efficient, sustainable, and stable lignan production in plants, including plant cell/organ cultures. Optimization of light conditions, utilization of a wide range of elicitor treatments, and construction of transiently gene-transfected or transgenic lignan-biosynthesizing plants are mainly being attempted. This review will present the basic and latest knowledge regarding metabolic engineering of lignans based on their biosynthetic pathways and biological activities, and the perspectives in lignan production via metabolic engineering.

29 April 2013 in Plant Physiology
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TKTomotsugu Koyama
Tomotsugu Koyama
HNHaruka Nii
Haruka Nii
NMNobutaka Mitsuda
Nobutaka Mitsuda
MOMasaru Ohta
Masaru Ohta
SKSakihito Kitajima
Sakihito Kitajima
FSFumihiko Sato
Fumihiko Sato
Leaf senescence is the final process of leaf development that involves the mobilization of nutrients from old leaves to newly growing tissues. Despite the identification of several transcription factors involved in the regulation of this process, the mechanisms underlying the progression of leaf senescence are largely unknown. Herein, we describe the proteasome-mediated regulation of class II ETHYLENE RESPONSE FACTOR (ERF) transcriptional repressors and involvement of these factors in the progression of leaf senescence in Arabidopsis (Arabidopsis thaliana). Based on previous results showing that the tobacco (Nicotiana tabacum) ERF3 (NtERF3) specifically interacts with a ubiquitin-conjugating enzyme, we examined the stability of NtERF3 in vitro and confirmed its rapid degradation by plant protein extracts. Furthermore, NtERF3 accumulated in plants treated with a proteasome inhibitor. The Arabidopsis class II ERFs AtERF4 and AtERF8 were also regulated by the proteasome and increased with plant aging. Transgenic Arabidopsis plants with enhanced expression of NtERF3, AtERF4, or AtERF8 showed precocious leaf senescence. Our gene expression and chromatin immunoprecipitation analyses suggest that AtERF4 and AtERF8 targeted the EPITHIOSPECIFIER PROTEIN/EPITHIOSPECIFYING SENESCENCE REGULATOR gene and regulated the expression of many genes involved in the progression of leaf senescence. By contrast, an aterf4 aterf8 double mutant exhibited delayed leaf senescence. Our results provide insight into the important role of class II ERFs in the progression of leaf senescence.

1 January 2018 in Plant Biotechnology
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TKTomotsugu Koyama
Tomotsugu Koyama
FSFumihiko Sato
Fumihiko Sato
Plants grow under threats of environmental changes that could injure cellular viability and damage whole-plant physiology. To defend themselves against such threats, plants induce protective responses, including the production of defense molecules. The red/purple pigment anthocyanin is synthesized upon leaf and fruit development as well as environmental stimuli such as excess light exposure. Therefore, the anthocyanin biosynthesis is considered as a model signaling pathway of the integration of developmental and environmental responses. This integration is tightly regulated by transcription factors, but the integrative mode of these signaling pathways has received little attention. In this study, using an Arabidopsis mutant with mutation in two ETHYLENE RESPONSE FACTOR (ERF) genes, AtERF4 and AtERF8, we investigated the regulatory signaling pathway that leads to the production of anthocyanin in response to light. We detected the accumulation of anthocyanin in detached leaves after incubation on water under light illumination and intact leaves after being transferred into the strong light condition, suggesting that the photoinhibition mediated the production of anthocyanin. Our results demonstrated that the erf mutant decreased the rate and extent of the production of anthocyanin in association with changes of the transcript levels of anthocyanin-biosynthetic genes. As these ERF genes are known regulators of leaf senescence—the final stage of leaf development—we provide an insight into the ERF-mediated integration of two regulatory pathways of the light response and developmental age.

1 November 2018 in Plant Science
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Journal Article
Open access
TKTomotsugu Koyama
Tomotsugu Koyama
Leaf senescence is the final step of leaf development and is usually accompanied by visible color changes from green to yellow or brown. Unlike the senescence of the whole body of animals and unicellular organisms, which is often associated with death, leaf senescence in plants requires highly integrative processes towards cell death with nutrient recycling and storage. Since leaf senescence plays pivotal roles in the production of plant biomass and grain yield, the mechanisms of degradation and relocation of macromolecules as well as the regulation of signaling and biosynthetic pathways have received much attention. The importance of the plant hormone ethylene in the onset of leaf senescence has been clearly documented. However, research has increasingly demonstrated that the function of ethylene in the regulation of leaf senescence is dependent on leaf development. This review raises the issue of how ethylene requires developmental regulators and focuses on the developmental aspect of leaf senescence. It also emphasizes the remarkable impact that developmental regulators have on regulating the onset of leaf senescence.