Oleg Babii

Oleg Babii

orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 February 2014 in Angewandte Chemie International Edition
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OBOleg Babii
Oleg Babii
SASergiy Afonin
Sergiy Afonin
MBMarina Berditsch
Marina Berditsch
SRSabine Reißer
Sabine Reißer
PMPavel K. Mykhailiuk
Pavel K. Mykhailiuk
IKIgor V. Komarov
Igor V. Komarov

30 March 2016 in Angewandte Chemie International Edition
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Journal Article
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OBOleg Babii
Oleg Babii
SASergiy Afonin
Sergiy Afonin
LGLiudmyla V. Garmanchuk
Liudmyla V. Garmanchuk
VNViktoria V. Nikulina
Viktoria V. Nikulina
TNTetiana V. Nikolaienko
Tetiana V. Nikolaienko
IKIgor V. Komarov
Igor V. Komarov

19 November 2018 in Journal of Medicinal Chemistry
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Journal Article
Open access
OBOleg Babii
Oleg Babii
SASergiy Afonin
Sergiy Afonin
AIAleksandr Yu. Ishchenko
Aleksandr Yu. Ishchenko
TSTim Schober
Tim Schober
ANAnatoliy O. Negelia
Anatoliy O. Negelia
AUAnne S Ulrich
Anne S Ulrich
Five series (28 structures) of photoswitchable β-hairpin peptides were synthesized, based on the cyclic scaffold of the natural antibiotic gramicidin S. Cell-type selectivity was compared for all activated (diarylethene ring-open) and deactivated (closed) forms in terms of antibacterial activity (MIC against E. coli and B. subtilis), anticancer activity (IC50 against HeLa cell line), and hemolytic cytotoxicity (HC50 against human erythrocytes). Correlations between the conformational plasticity of the peptides, their hydrophobicity and their bioactivity were also analyzed. Considerable improvements in selectivity were achieved compared to the reference compound. We found a dissociation of the anticancer activity from hemolysis. Phototherapeutic indices (PTI) – HC50(closed)/MIC(open) and HC50(closed)/IC50(open) – were introduced for the peptides as safety criteria. The highest PTI for HeLa-selective toxicity were observed among analogues containing hydroxyleucine on the hydrophobic face. For one compound, high PTIs were demonstrated across a range of different cancer cell lines, including a doxorubicin-resistant one.

29 November 2019 in Scientific Reports
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MBMarina Berditsch
Marina Berditsch
SASergiy Afonin
Sergiy Afonin
JRJennifer Reuster
Jennifer Reuster
HLHannah Lux
Hannah Lux
KSKristina Schkolin
Kristina Schkolin
AUAnne S Ulrich
Anne S Ulrich
Three promising antibacterial peptides were studied with regard to their ability to inhibit the growth and kill the cells of clinical strains of Staphylococcus aureus, Enterococcus faecalis and Enterococcus faecium. The multifunctional gramicidin S (GS) was the most potent, compared to the membranotropic temporin L (TL), being more effective than the innate-defence regulator IDR-1018 (IDR). These activities, compared across 16 strains as minimal bactericidal and minimal inhibitory concentrations (MIC), are independent of bacterial resistance pattern, phenotype variations and/or biofilm-forming potency. For S. aureus strains, complete killing is accomplished by all peptides at 5 × MIC. For E. faecalis strains, only GS exhibits a rapid bactericidal effect at 5 × MIC, while TL and IDR require higher concentrations. The biofilm-preventing activities of all peptides against the six strains with the largest biofilm biomass were compared. GS demonstrates the lowest minimal biofilm inhibiting concentrations, whereas TL and IDR are consistently less effective. In mature biofilms, only GS completely kills the cells of all studied strains. We compare the physicochemical properties, membranolytic activities, model pharmacokinetics and eukaryotic toxicities of the peptides and explain the bactericidal, antipersister and antibiofilm activities of GS by its elevated stability, pronounced cell-penetration ability and effective utilization of multiple modes of antibacterial action.

5 October 2016 in Angewandte Chemie International Edition
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SKSerhii O. Kokhan
Serhii O. Kokhan
ATAndriy V. Tymtsunik
Andriy V. Tymtsunik
SGStephan L. Grage
Stephan L. Grage
SASergiy Afonin
Sergiy Afonin
OBOleg Babii
Oleg Babii
PMPavel K. Mykhailiuk
Pavel K. Mykhailiuk

7 September 2016 in Pharmaceuticals
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Journal Article
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MBMarina Berditsch
Marina Berditsch
HLHannah Lux
Hannah Lux
OBOleg Babii
Oleg Babii
SASergiy Afonin
Sergiy Afonin
AUAnne S Ulrich
Anne S Ulrich
An intrinsic clindamycin-resistant Enterococcus faecalis, the most common single species present in teeth after failed root canal therapy, often possesses acquired tetracycline resistance. In these cases, root canal infections are commonly treated with Ledermix® paste, which contains demeclocycline, or the new alternative endodontic paste Odontopaste, which contains clindamycin; however, these treatments are often ineffective. We studied the killing activity of the cyclic antimicrobial peptide gramicidin S (GS) against planktonic and biofilm cells of tetracycline-resistant clinical isolates of E. faecalis. The high therapeutic potential of GS for the topical treatment of problematic teeth is based on the rapid bactericidal effect toward the biofilm-forming, tetracycline-resistant E. faecalis. GS reduces the cell number of planktonic cells within 20–40 min at a concentration of 40–80 μg/mL. It kills the cells of pre-grown biofilms at concentrations of 100–200 μg/mL, such that no re-growth is possible. The translocation of the peptide into the cell interior and its complexation with intracellular nucleotides, including the alarmon ppGpp, can explain its anti-biofilm effect. The successful treatment of persistently infected root canals of two volunteers confirms the high effectiveness of GS. The broad GS activity towards resistant, biofilm-forming E. faecalis suggests its applications for approval in root canal medication.