Johannes Bauer-Marschallinger

Mr. Johannes Bauer-Marschallinger


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 August 2017 in Biomedical Optics Express
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Journal Article
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JBJohannes Bauer-Marschallinger
Johannes Bauer-Marschallinger
KFKaroline Felbermayer
Karoline Felbermayer
TBThomas Berer
Thomas Berer
We introduce all-optical photoacoustic projection imaging. An array of fiber-optic interferometers is used to measure photoacoustic signals. The obtained images represent the projection of the three-dimensional spatial light absorbance within a sample onto a two-dimensional plane. We assess the performance of the system by phantom measurements and show that the fiber-optic detectors achieve a noise-equivalent pressure of 24 Pascal at a 10 MHz bandwidth. Furthermore, we demonstrate the ability to acquire high-resolution projection images of large volumes within a short period of time.

10 January 2019 in Journal of Imaging
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PBPeter Burgholzer
Peter Burgholzer
JBJohannes Bauer-Marschallinger
Johannes Bauer-Marschallinger
BRBernhard Reitinger
Bernhard Reitinger
TBThomas Berer
Thomas Berer
In conventional photoacoustic tomography, several effects contribute to the loss of resolution, such as the limited bandwidth and the finite size of the transducer, or the space-dependent speed of sound. They can all be compensated (in principle) technically or numerically. Frequency-dependent acoustic attenuation also limits spatial resolution by reducing the bandwidth of the photoacoustic signal, which can be numerically compensated only up to a theoretical limit given by thermodynamics. The entropy production, which is the dissipated energy of the acoustic wave divided by the temperature, turns out to be equal to the information loss, which cannot be compensated for by any reconstruction method. This is demonstrated for the propagation of planar acoustic waves in water, which are induced by short laser pulses and measured by piezoelectric acoustical transducers. It turns out that for water, where the acoustic attenuation is proportional to the squared frequency, the resolution limit is proportional to the square root of the distance and inversely proportional to the square root of the logarithm of the signal-to-noise ratio. The proposed method could be used in future work for media other than water, such as biological tissue, where acoustic attenuation has a different power-law frequency dependence.

1 March 2017 in Photoacoustics
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JBJohannes Bauer-Marschallinger
Johannes Bauer-Marschallinger
AHAstrid Höllinger
Astrid Höllinger
BJBernhard Jakoby
Bernhard Jakoby
PBPeter Burgholzer
Peter Burgholzer
TBThomas Berer
Thomas Berer
We report on a novel imaging system for large depth of field photoacoustic scanning macroscopy. Instead of commonly used piezoelectric transducers, fiber-optic based ultrasound detection is applied. The optical fibers are shaped into rings and mainly receive ultrasonic signals stemming from the ring symmetry axes. Four concentric fiber-optic rings with varying diameters are used in order to increase the image quality. Imaging artifacts, originating from the off-axis sensitivity of the rings, are reduced by coherence weighting. We discuss the working principle of the system and present experimental results on tissue mimicking phantoms. The lateral resolution is estimated to be below 200 μm at a depth of 1.5 cm and below 230 μm at a depth of 4.5 cm. The minimum detectable pressure is in the order of 3 Pa. The introduced method has the potential to provide larger imaging depths than acoustic resolution photoacoustic microscopy and an imaging resolution similar to that of photoacoustic computed tomography.

31 January 2019 in arXiv
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SAStephan Antholzer
Stephan Antholzer
JSJohannes Schwab
Johannes Schwab
JBJohannes Bauer-Marschallinger
Johannes Bauer-Marschallinger
PBPeter Burgholzer
Peter Burgholzer
Markus HaltmeierMarkus Haltmeier
Markus Haltmeier
We discuss several methods for image reconstruction in compressed sensing photoacoustic tomography (CS-PAT). In particular, we apply the deep learning method of [H. Li, J. Schwab, S. Antholzer, and M. Haltmeier. NETT: Solving Inverse Problems with Deep Neural Networks (2018), arXiv:1803.00092], which is based on a learned regularizer, for the first time to the CS-PAT problem. We propose a network architecture and training strategy for the NETT that we expect to be useful for other inverse problems as well. All algorithms are compared and evaluated on simulated data, and validated using experimental data for two different types of phantoms. The results on the one the hand indicate great potential of deep learning methods, and on the other hand show that significant future work is required to improve their performance on real-word data.