Juan M Falcon-Perez

Dr. Juan M Falcon-Perez

orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 February 2024 in Journal of Extracellular Vesicles
Verified
Journal Article
Open access
Joshua WelshJoshua Welsh
Joshua Welsh
DGDeborah Goberdhan
Deborah Goberdhan
LOLorraine O'Driscoll
Lorraine O'Driscoll
EBEdit Buzas
Edit Buzas
CBCherie Blenkiron
Cherie Blenkiron
KWKenneth Witwer
Kenneth Witwer
Extracellular vesicles (EVs), through their complex cargo, can reflect the state of their cell of origin and change the functions and phenotypes of other cells. These features indicate strong biomarker and therapeutic potential and have generated broad interest, as evidenced by the steady year‐on‐year increase in the numbers of scientific publications about EVs. Important advances have been made in EV metrology and in understanding and applying EV biology. However, hurdles remain to realising the potential of EVs in domains ranging from basic biology to clinical applications due to challenges in EV nomenclature, separation from non‐vesicular extracellular particles, characterisation and functional studies. To address the challenges and opportunities in this rapidly evolving field, the International Society for Extracellular Vesicles (ISEV) updates its ‘Minimal Information for Studies of Extracellular Vesicles’, which was first published in 2014 and then in 2018 as MISEV2014 and MISEV2018, respectively. The goal of the current document, MISEV2023, is to provide researchers with an updated snapshot of available approaches and their advantages and limitations for production, separation and characterisation of EVs from multiple sources, including cell culture, body fluids and solid tissues. In addition to presenting the latest state of the art in basic principles of EV research, this document also covers advanced techniques and approaches that are currently expanding the boundaries of the field. MISEV2023 also includes new sections on EV release and uptake and a brief discussion of in vivo approaches to study EVs. Compiling feedback from ISEV expert task forces and more than 1000 researchers, this document conveys the current state of EV research to facilitate robust scientific discoveries and move the field forward even more rapidly.

18 December 2012 in PLOS Biology
Verified
Journal Article
Open access
PDF file
HKHina Kalra
Hina Kalra
RSRichard J. Simpson
Richard J. Simpson
HJHong Ji
Hong Ji
EAElena Aikawa
Elena Aikawa
PAPeter Altevogt
Peter Altevogt
Suresh MathivananSuresh Mathivanan
Suresh Mathivanan
Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findings have generated immense interest, along with an exponential increase in molecular data pertaining to EVs. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not regularly updated. In addition, more than 20% of the database links are inactive. To prevent such database and link decay, we have initiated a continuous community annotation project with the active involvement of EV researchers. The EV research community can set a gold standard in data sharing with Vesiclepedia, which could evolve as a primary resource for the field.

11 November 2008 in Journal of Proteome Research
Verified
Journal Article
Closed access
JCJavier Conde-Vancells
Javier Conde-Vancells
EREva Rodriguez-Suarez
Eva Rodriguez-Suarez
NENieves Embade
Nieves Embade
DGDavid Gil
David Gil
Rune MatthiesenRune Matthiesen
Rune Matthiesen
JFJuan M Falcon-Perez
Juan M Falcon-Perez

25 August 2020 in Cells
Verified
Journal Article
Open access
PDF file
FRFelix Royo
Felix Royo
CTClotilde Théry
Clotilde Théry
JFJuan M Falcon-Perez
Juan M Falcon-Perez
RNRienk Nieuwland
Rienk Nieuwland
KWKenneth Witwer
Kenneth Witwer
Research on extracellular vesicles (EVs) is growing exponentially due to an increasing appreciation of EVs as disease biomarkers and therapeutics, an expanding number of EV-containing materials under study, and application of new preparation, detection, and cargo analysis methods. Diversity of both sources and methodologies imposes challenges on the comparison of measurement results between studies and laboratories. While reference guidelines and minimal requirements for EV research have achieved the important objective of assembling community consensus, it is also essential to understand which methodologies and quality controls are currently being applied, and how usage trends are evolving. As an initial response to this need, the International Society for Extracellular Vesicles (ISEV) performed a worldwide survey in 2015 on “Techniques used for the isolation and characterization of extracellular vesicles” and published the results from this survey in 2016. In 2019, a new survey was performed to assess the changing state of the field. The questionnaire received more than 600 full or partial responses, and the present manuscript summarizes the results of this second worldwide survey. The results emphasize that separation methods such as ultracentrifugation and density gradients are still the most commonly used methods, the use of size exclusion chromatography has increased, and techniques based on tangential flow and microfluidics are now being used by more than 10% of respondents. The survey also reveals that most EV researchers still do not perform sample quality controls before or after isolation of EVs. Finally, the majority of EV researchers emphasize that separation and characterization of EVs should receive more attention.

10 November 2014 in Bioinformatics
Verified
Journal Article
Open access
PDF file
DKDae-Kyum Kim
Dae-Kyum Kim
JLJaewook Lee
Jaewook Lee
SKSae Rom Kim
Sae Rom Kim
DCDongsic Choi
Dongsic Choi
YYYae Jin Yoon
Yae Jin Yoon
YGYong Song Gho
Yong Song Gho
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging. Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info. Contact:ysgho@postech.ac.kr

1 December 2017 in Journal of Extracellular Vesicles
Verified
Journal Article
Open access
MPMohashin Pathan
Mohashin Pathan
SKShivakumar Keerthikumar
Shivakumar Keerthikumar
DCDavid Chisanga
David Chisanga
RARiccardo Alessandro
Riccardo Alessandro
CAChing‐Seng Ang
Ching‐Seng Ang
Suresh MathivananSuresh Mathivanan
Suresh Mathivanan
Bioinformatics tools are imperative for the in depth analysis of heterogeneous high‐throughput data. Most of the software tools are developed by specific laboratories or groups or companies wherein they are designed to perform the required analysis for the group. However, such software tools may fail to capture “what the community needs in a tool”. Here, we describe a novel community‐driven approach to build a comprehensive functional enrichment analysis tool. Using the existing FunRich tool as a template, we invited researchers to request additional features and/or changes. Remarkably, with the enthusiastic participation of the community, we were able to implement 90% of the requested features. FunRich enables plugin for extracellular vesicles wherein users can download and analyse data from Vesiclepedia database. By involving researchers early through community needs software development, we believe that comprehensive analysis tools can be developed in various scientific disciplines.