In the present study, our aim is to investigate the preferential binding mode and encapsulation of the flavonoid fisetin in the nano-pore of β-cyclodextrin (β-CD) at the molecular level using various theoretical approaches: molecular docking, molecular dynamics (MD) simulations and binding free energy calculations. The molecular docking suggested four possible fisetin orientations in the cavity through its chromone or phenyl ring with two different geometries of fisetin due to the rotatable bond between the two rings. From the multiple MD results, the phenyl ring of fisetin favours its inclusion into the β-CD cavity, whilst less binding or even unbinding preference was observed in the complexes where the larger chromone ring is located in the cavity. All MM- and QM-PBSA/GBSA free energy predictions supported the more stable fisetin/β-CD complex of the bound phenyl ring. Van der Waals interaction is the key force in forming the complexes. In addition, the quantum mechanics calculations with M06-2X/6-31G(d,p) clearly showed that both solvation effect and BSSE correction cannot be neglected for the energy determination of the chosen system.
31 July 2018 in Physical Chemistry Chemical Physics
We used density functional theory (DFT) to investigate hydrogen adsorption and diffusion on platinum-decorated carbon nanocones (Pt-CNCs). The curvature presented in the conical section of CNC materials affects the Pt binding stability. The role of Pt atoms as an active catalyst for H2 adsorption and dissociation has been investigated in perfect Pt-4CNC and defect Pt-v4CNC systems. Then, the spillover mechanism of dissociated hydrogen atoms in Pt-v4CNC is explored via two reaction steps: (i) H-migration from Pt to carbon atoms and (ii) H-diffusion via the C–C route throughout the CNC surface. Our results show that the presence of the hydrogen atom on the Pt catalyst can efficiently induce the H-diffusion process through the C–C surface, and the Pt–H bond significantly facilitates the H-migration from C–H bonds near to the active Pt catalyst to the adjacent carbon atom with an energy barrier <0.5 eV under ambient conditions. Altogether, the theoretical results support the concept of the spillover mechanism as a key process for enhancing the hydrogen storage capacity of metal-decorated CNCs. These results improve our understanding about the hydrogen spillover mechanism and the catalytic reactions which are very important for the development of highly efficient hydrogen storage materials.
1 December 2018 in International Journal of Hydrogen Energy