Dave Clarke

Mr. Dave Clarke

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Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2021 in Harmful Algae
Verified
Journal Article
Closed access
EBEileen Bresnan
Eileen Bresnan
FAFabiola Arévalo
Fabiola Arévalo
CBCatherine Belin
Catherine Belin
MBMaria A.C. Branco
Maria A.C. Branco
Allan Douglas CembellaAllan Douglas Cembella
Allan Douglas Cembella
HEHenrik Enevoldsen
Henrik Enevoldsen


8 January 2021 in Microorganisms
Verified
Journal Article
Open access
PDF file
UTUrban Tillmann
Urban Tillmann
SWStephan Wietkamp
Stephan Wietkamp
Haifeng GuHaifeng Gu
Haifeng Gu
BKBernd Krock
Bernd Krock
RSRafael Salas
Rafael Salas
DCDave Clarke
Dave Clarke
Azaspiracids (AZA) are a group of lipophilic toxins, which are produced by a few species of the marine nanoplanktonic dinoflagellates Azadinium and Amphidoma (Amphidomataceae). A survey was conducted in 2018 to increase knowledge on the diversity and distribution of amphidomatacean species and their toxins in Irish and North Sea waters (North Atlantic). We here present a detailed morphological, phylogenetic, and toxinological characterization of 82 new strains representing the potential AZA producers Azadinium spinosum and Amphidoma languida. A total of ten new strains of Am. languida were obtained from the North Sea, and all conformed in terms of morphology and toxin profile (AZA-38 and-39) with previous records from the area. Within 72 strains assigned to Az. spinosum there were strains of two distinct ribotypes (A and B) which consistently differed in their toxin profile (dominated by AZA-1 and -2 in ribotype A, and by AZA-11 and -51 in ribotype B strains). Five strains conformed in morphology with Az. spinosum, but no AZA could be detected in these strains. Moreover, they revealed significant nucleotide differences compared to known Az. spinosum sequences and clustered apart from all other Az. spinosum strains within the phylogenetic tree, and therefore were provisionally designated as Az. cf. spinosum. These Az. cf. spinosum strains without detectable AZA were shown not to cause amplification in the species-specific qPCR assay developed to detect and quantify Az. spinosum. As shown here for the first time, AZA profiles differed between strains of Az. spinosum ribotype A in the presence/absence of AZA-1, AZA-2, and/or AZA-33, with the majority of strains having all three AZA congeners, and others having only AZA-1, AZA-1 and AZA-2, or AZA-1 and AZA-33. In contrast, no AZA profile variability was observed in ribotype B strains. Multiple AZA analyses of a period of up to 18 months showed that toxin profiles (including absence of AZA for Az. cf. spinosum strains) were consistent and stable over time. Total AZA cell quotas were highly variable both among and within strains, with quotas ranging from 0.1 to 63 fg AZA cell−1. Cell quota variability of single AZA compounds for Az. spinosum strains could be as high as 330-fold, but the underlying causes for the extraordinary large variability of AZA cell quota is poorly understood.

1 November 2017 in Harmful Algae
Verified
Journal Article
Closed access
RPRuth F. Paterson
Ruth F. Paterson
SMSharon McNeill
Sharon McNeill
EMElaine Mitchell
Elaine Mitchell
TAThomas Adams
Thomas Adams
SSSarah Swan
Sarah Swan
Keith DavidsonKeith Davidson
Keith Davidson

4 January 2021 in Phycological Research
Verified
Journal Article
Open access
PDF file
RSRafael Salas
Rafael Salas
UTUrban Tillmann
Urban Tillmann
Haifeng GuHaifeng Gu
Haifeng Gu
SWStephan Wietkamp
Stephan Wietkamp
BKBernd Krock
Bernd Krock
DCDave Clarke
Dave Clarke
SUMMARY: Shellfish contamination with azaspiracids (AZA), which are lipophilic marine biotoxins produced by marine dinoflagellates, is a major and recurrent problem for the Irish shellfish industry. AZA are produced by certain species of Amphidomataceae, but the species diversity of this group of microalgae in Irish waters is poorly known. Here we present a morphological and molecular characterization of multiple new strains of non‐toxigenic Azadinium isolated on an oceanographic survey in 2018. A lack of AZA production for all strains presented here was demonstrated by LC‐MS/MS analysis. One strain of Azadinium caudatum var. margalefii (first strain for the area) confirmed non‐toxigenicity of Atlantic populations of this species. One strain designated as Azadinium cf. zhuanum was similar to Az. zhuanum described from China but differed from the type strain in nucleus position, by the dominant number of apical plates, and by significant differences in rRNA gene sequences. Finally, two new non‐toxigenic Azadinium species are described from the North East Atlantic: Azadinium galwayense sp. nov. and Azadinium perfusorium sp. nov. Azadinium galwayense differed from other Azadinium by a characteristic combination regarding presence and location of the ventral pore (vp; on the right side of the pore plate), of a pyrenoid (located in the episome), and by a pentagonal shape of the median anterior intercalary plate 2a, and lack of contact between plates 1″ and 1a. Azadinium perfusorium shared the same vp position as Az. galwayense and differed by a characteristic combination of a pyrenoid located in the hyposome, a tetragonal shape of plate 2a, and a relatively large size of the two lateral anterior intercalary plates. Molecular phylogeny confirmed the distinctiveness of these two new species and their placement in Azadinium. The present findings significantly increased knowledge on the diversity of Azadinium species in the North East Atlantic.

5 February 2019 in Journal of Plankton Research
Verified
Journal Article
Open access
SWStephan Wietkamp
Stephan Wietkamp
UTUrban Tillmann
Urban Tillmann
DCDave Clarke
Dave Clarke
KTKerstin Toebe
Kerstin Toebe