Vikas Nanda

Prof. Vikas Nanda


Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 January 2008 in Nature
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Journal Article
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ASAmanda L. Stouffer
Amanda L. Stouffer
RARudresh Acharya
Rudresh Acharya
DSDavid Salom
David Salom
ALAnna S. Levine
Anna S. Levine
di costanzo Luigidi costanzo Luigi
di costanzo Luigi
WDWilliam F. DeGrado
William F. DeGrado

17 December 2009 in Nature Chemistry
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Journal Article
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VNVikas Nanda
Vikas Nanda
RKRonald Koder
Ronald Koder

15 January 2005 in Journal of the American Chemical Society
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Journal Article
Closed access
FCFrank V. Cochran
Frank V. Cochran
SWSophia P. Wu
Sophia P. Wu
WWWei Wang
Wei Wang
VNVikas Nanda
Vikas Nanda
JSJeffery G. Saven
Jeffery G. Saven
WDWilliam F. DeGrado
William F. DeGrado

1 February 2007 in Journal of Molecular Biology
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Journal Article
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ASAlessandro Senes
Alessandro Senes
DCDeborah C. Chadi
Deborah C. Chadi
PLPeter B. Law
Peter B. Law
RWRobin F.S. Walters
Robin F.S. Walters
VNVikas Nanda
Vikas Nanda
WDWilliam F. DeGrado
William F. DeGrado

1 June 2004 in Journal of Biological Chemistry
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Journal Article
Open access
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RLRenhao Li
Renhao Li
RGRoman Gorelik
Roman Gorelik
VNVikas Nanda
Vikas Nanda
PLPeter B. Law
Peter B. Law
JLJames D. Lear
James D. Lear
JBJoel S. Bennett
Joel S. Bennett
Homo- and hetero-oligomeric interactions between the transmembrane (TM) helices of integrin α and β subunits may play an important role in integrin activation and clustering. As a first step to understanding these interactions, we used the TOXCAT assay to measure oligomerization of the wild-type αIIb TM helix and single-site TM domain mutants. TOXCAT measures the oligomerization of a chimeric protein containing a TM helix in the Escherichia coli inner membrane via the transcriptional activation of the gene for chloramphenicol acetyltransferase. We found the amount of chloramphenicol acetyltransferase induced by the wild-type αIIb TM helix was approximately half that induced by the strongly dimerizing TM helix of glycophorin A, confirming that the αIIb TM domain oligomerizes in biological membranes. Mutating each of the αIIb TM domain residues to either Ala, Leu, Ile, or Val revealed that a GXXXG motif mediates oligomerization. Further, we found that the residue preceding each glycine contributed to the oligomerization interface, as did the residue at position i + 4 after the second Gly of GXXXG. Thus, the sequence XXVGXXGGXXXLXX is critical for oligomerization of αIIb TM helix. These data were used to generate an atomic model of the αIIb homodimer, revealing a family of structures with right-handed crossing angles of 40° to 60°, consistent with a 4.0-residue periodicity, and with an interface rotated by 50° relative to glycophorin A. Thus, although the αIIb TM helix makes use of the GXXXG framework, neighboring residues have evolved to engineer its dimerization interface, enabling it to subserve specific and specialized functions.

1 April 2005 in Journal of the American Chemical Society
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Journal Article
Closed access
VNVikas Nanda
Vikas Nanda
MRMichael M. Rosenblatt
Michael M. Rosenblatt
AOArtur Osyczka
Artur Osyczka
HKHidetoshi Kono
Hidetoshi Kono
ZGZelleka Getahun
Zelleka Getahun
WDWilliam F. DeGrado
William F. DeGrado