Denis Kainov

Dr. Denis Kainov

ikom, NTNU, Trondheim, Sør-Trøndelag, Norway
orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2020 in International Journal of Infectious Diseases
Verified
Journal Article
Open access
PAPetter I. Andersen
Petter I. Andersen
AIAleksandr Ianevski
Aleksandr Ianevski
HLHilde Lysvand
Hilde Lysvand
AVAstra Vitkauskiene
Astra Vitkauskiene
Valentyn OksenychValentyn Oksenych
Valentyn Oksenych
Denis KainovDenis Kainov
Denis Kainov
Viral diseases are one of the leading causes of morbidity and mortality in the world. Virus-specific vaccines and antiviral drugs are the most powerful tools to combat viral diseases. However, broad-spectrum antiviral agents (BSAAs, i.e. compounds targeting viruses belonging to two or more viral families) could provide additional protection of the general population from emerging and re-emerging viral diseases, reinforcing the arsenal of available antiviral options. Here, we review discovery and development of BSAAs and summarize the information on 120 safe-in-man agents in a freely accessible database (https://drugvirus.info/). Future and ongoing pre-clinical and clinical studies will increase the number of BSAAs, expand the spectrum of their indications, and identify drug combinations for treatment of emerging and re-emerging viral infections as well as co-infections.

1 January 2021 in Cell Reports Medicine
Verified
Journal Article
Open access
JLJason T. Ladner
Jason T. Ladner
SHSierra N. Henson
Sierra N. Henson
ABAnnalee S. Boyle
Annalee S. Boyle
AEAnna L. Engelbrektson
Anna L. Engelbrektson
ZFZane W. Fink
Zane W. Fink
JAJohn A. Altin
John A. Altin
The SARS-CoV-2 proteome shares regions of conservation with endemic human coronaviruses (CoVs), but it remains unknown to what extent these may be cross-recognized by the antibody response. Here, we study cross-reactivity using a highly multiplexed peptide assay (PepSeq) to generate an epitope-resolved view of IgG reactivity across all human CoVs in both COVID-19 convalescent and negative donors. PepSeq resolves epitopes across the SARS-CoV-2 Spike and Nucleocapsid proteins that are commonly targeted in convalescent donors, including several sites also recognized in some uninfected controls. By comparing patterns of homologous reactivity between CoVs and using targeted antibody-depletion experiments, we demonstrate that SARS-CoV-2 elicits antibodies that cross-recognize pandemic and endemic CoV antigens at two Spike S2 subunit epitopes. We further show that these cross-reactive antibodies preferentially bind endemic homologs. Our findings highlight sites at which the SARS-CoV-2 response appears to be shaped by previous CoV exposures and which have the potential to raise broadly neutralizing responses.

1 September 2004 in Cell
Verified
Journal Article
Closed access
EMErika Mancini
Erika Mancini
Denis KainovDenis Kainov
Denis Kainov
JGJonathan M. Grimes
Jonathan M. Grimes
RTRoman Tuma
Roman Tuma
DBDennis Bamford
Dennis Bamford
DSDavid Ian Stuart
David Ian Stuart

12 August 2017 in Viruses
Verified
Journal Article
Open access
PDF file
JSJung Min Shim
Jung Min Shim
JKJinhee Kim
Jinhee Kim
TTTanel Tenson
Tanel Tenson
JMJi-Young Min
Ji-Young Min
Denis KainovDenis Kainov
Denis Kainov
Human influenza A viruses (IAVs) cause global pandemics and epidemics, which remain serious threats to public health because of the shortage of effective means of control. To combat the surge of viral outbreaks, new treatments are urgently needed. Developing new virus control modalities requires better understanding of virus-host interactions. Here, we describe how IAV infection triggers cellular apoptosis and how this process can be exploited towards the development of new therapeutics, which might be more effective than the currently available anti-influenza drugs.

1 March 2019 in Viruses
Verified
Journal Article
Open access
PDF file
AIAleksandr Ianevski
Aleksandr Ianevski
EZEva Zusinaite
Eva Zusinaite
NSNastassia Shtaida
Nastassia Shtaida
HKHannimari Kallio-Kokko
Hannimari Kallio-Kokko
MVMiia Valkonen
Miia Valkonen
Denis KainovDenis Kainov
Denis Kainov
With the increasing pace of global warming, it is important to understand the role of meteorological factors in influenza virus (IV) epidemics. In this study, we investigated the impact of temperature, UV index, humidity, wind speed, atmospheric pressure, and precipitation on IV activity in Norway, Sweden, Finland, Estonia, Latvia and Lithuania during 2010–2018. Both correlation and machine learning analyses revealed that low temperature and UV indexes were the most predictive meteorological factors for IV epidemics in Northern Europe. Our in vitro experiments confirmed that low temperature and UV radiation preserved IV infectivity. Associations between these meteorological factors and IV activity could improve surveillance and promote development of accurate predictive models for future influenza outbreaks in the region.

13 June 2020 in Viruses
Verified
Journal Article
Open access
PDF file
AIAleksandr Ianevski
Aleksandr Ianevski
RYRouan Yao
Rouan Yao
MFMona Fenstad
Mona Fenstad
SBSvetlana Biza
Svetlana Biza
EZEva Zusinaite
Eva Zusinaite
Denis KainovDenis Kainov
Denis Kainov
As of June 2020, the number of people infected with severe acute respiratory coronavirus 2 (SARS-CoV-2) continues to skyrocket, with more than 6.7 million cases worldwide. Both the World Health Organization (WHO) and United Nations (UN) has highlighted the need for better control of SARS-CoV-2 infections. However, developing novel virus-specific vaccines, monoclonal antibodies and antiviral drugs against SARS-CoV-2 can be time-consuming and costly. Convalescent sera and safe-in-man broad-spectrum antivirals (BSAAs) are readily available treatment options. Here, we developed a neutralization assay using SARS-CoV-2 strain and Vero-E6 cells. We identified the most potent sera from recovered patients for the treatment of SARS-CoV-2-infected patients. We also screened 136 safe-in-man broad-spectrum antivirals against the SARS-CoV-2 infection in Vero-E6 cells and identified nelfinavir, salinomycin, amodiaquine, obatoclax, emetine and homoharringtonine. We found that a combination of orally available virus-directed nelfinavir and host-directed amodiaquine exhibited the highest synergy. Finally, we developed a website to disseminate the knowledge on available and emerging treatments of COVID-19.