Utku Kursat Ercan

Dr. Utku Kursat Ercan

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 February 2020 in Advanced Functional Materials
Verified
Journal Article
Closed access
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DKDidem Şen Karaman
Didem Şen Karaman
UEUtku Kursat Ercan
Utku Kursat Ercan
EBEmel Bakay
Emel Bakay
NTNermin Topaloğlu
Nermin Topaloğlu
Jessica M. RosenholmJessica M. Rosenholm
Jessica M. Rosenholm

18 July 2023 in Plasma Processes and Polymers
Verified
Journal Article
Open access
UEUtku Kursat Ercan
Utku Kursat Ercan
GÖGizem Dilara Özdemir
Gizem Dilara Özdemir
MOMehmet Akif Ozdemir
Mehmet Akif Ozdemir
OGOnan Güren
Onan Güren
The current trends that incorporate artificial intelligence (AI) and medicine have created new opportunities for improvement in both early diagnosis and treatment of diseases. In this framework, AI might also have the potential to significantly revolutionize the way we approach the field of plasma medicine, an area that is quickly growing and uses cold atmospheric plasma (CAP) to address a variety of medical conditions. Plasma medicine offers promising therapeutic alternatives for conditions widely ranging from cancer treatment to wound healing and antimicrobial applications, but the complexity of the plasma sources and the huge number of parameters may be overwhelming for the determination of underlying mechanisms and for understanding the effect of the source. This is where AI steps in, to provide strong tools for modeling, evaluating, and controlling CAPs. By harnessing the power of AI, researchers in the plasma medicine area, are now able to evaluate massive volumes of data, enhance their treatment protocols, and predict treatment results with a level of precision never possible before. Hereby, we emphasized the potential and further utilization of AI in plasma medicine in light of the fascinating and recent developments in this cooperation. New opportunities are encouraging, but potential limitations, ethical issues, model transparency, and generalizability should be considered. Regardless, the possibilities are endless, and the future of plasma medicine is looking brighter than ever with the implementation of AI.

5 September 2018 in PLOS ONE
Verified
Journal Article
Open access
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UEUtku Kursat Ercan
Utku Kursat Ercan
FOFatma Ibis Ozdemir
Fatma Ibis Ozdemir
CDCaner Dikyol
Caner Dikyol
Nesrin HorzumNesrin Horzum
Nesrin Horzum
OKOzan Karaman
Ozan Karaman
EDEmine Afra Demirci
Emine Afra Demirci
Surgical site infections have a remarkable impact on morbidity, extended hospitalization and mortality. Sutures strongly contribute to development of surgical site infections as they are considered foreign material in the human body. Sutures serve as excellent surfaces for microbial adherence and subsequent colonization, biofilm formation and infection on the site of a surgery. Various antimicrobial sutures have been developed to prevent suture-mediated surgical site infection. However, depending on the site of surgery, antimicrobial sutures may remain ineffective, and antimicrobial agents on them might have drawbacks. Plasma, defined as the fourth state of matter, composed of ionized gas, reactive oxygen and nitrogen species, free radical and neutrals, draws attention for the control and prevention of hospital-acquired infections due to its excellent antimicrobial activities. In the present study, the efficacy of non-thermal atmospheric plasma treatment for prevention of surgical site infections was investigated. First, contaminated poly (glycolic-co-lactic acid), polyglycolic acid, polydioxanone and poly (glycolic acid-co-caprolactone) sutures were treated with non-thermal atmospheric plasma to eradicate contaminating bacteria like Staphylococcus aureus and Escherichia coli. Moreover, sutures were pre-treated with non-thermal atmospheric plasma and then exposed to S. aureus and E. coli. Our results revealed that non-thermal atmospheric plasma treatment effectively eradicates contaminating bacteria on sutures, and non-thermal atmospheric plasma pre-treatment effectively prevents bacterial colonization on sutures without altering their mechanical properties. Chemical characterization of sutures was performed with FT-IR and XPS and results showed that non-thermal atmospheric plasma treatment substantially increased the hydrophilicity of sutures which might be the primary mechanism for the prevention of bacterial colonization. In conclusion, plasma-treated sutures could be considered as novel alternative materials for the control and prevention of surgical site infections.

10 November 2017 in Tissue Engineering and Regenerative Medicine
Verified
Journal Article
Closed access
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OKOzan Karaman
Ozan Karaman
SKSeyfi Kelebek
Seyfi Kelebek
EDEmine Afra Demirci
Emine Afra Demirci
FIFatma İbIş
Fatma İbIş
MUMurat Ulu
Murat Ulu
UEUtku Kursat Ercan
Utku Kursat Ercan

17 January 2024 in BMC Biomedical Engineering
Verified
Journal Article
Open access
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BOBasak Olcay
Basak Olcay
GOGizem D. Ozdemir
Gizem D. Ozdemir
MOMehmet Akif Ozdemir
Mehmet Akif Ozdemir
UEUtku Kursat Ercan
Utku Kursat Ercan
OGOnan Guren
Onan Guren
OKOzan Karaman
Ozan Karaman
Background: Infectious diseases not only cause severe health problems but also burden the healthcare system. Therefore, the effective treatment of those diseases is crucial. Both conventional approaches, such as antimicrobial agents, and novel approaches, like antimicrobial peptides (AMPs), are used to treat infections. However, due to the drawbacks of current approaches, new solutions are still being investigated. One recent approach is the use of AMPs and antimicrobial agents in combination, but determining synergism is with a huge variety of AMPs time-consuming and requires multiple experimental studies. Machine learning (ML) algorithms are widely used to predict biological outcomes, particularly in the field of AMPs, but no previous research reported on predicting the synergistic effects of AMPs and antimicrobial agents. Results: Several supervised ML models were implemented to accurately predict the synergistic effect of AMPs and antimicrobial agents. The results demonstrated that the hyperparameter-optimized Light Gradient Boosted Machine Classifier (oLGBMC) yielded the best test accuracy of 76.92% for predicting the synergistic effect. Besides, the feature importance analysis reveals that the target microbial species, the minimum inhibitory concentrations (MICs) of the AMP and the antimicrobial agents, and the used antimicrobial agent were the most important features for the prediction of synergistic effect, which aligns with recent experimental studies in the literature. Conclusion: This study reveals that ML algorithms can predict the synergistic activity of two different antimicrobial agents without the need for complex and time-consuming experimental procedures. The implications support that the ML models may not only reduce the experimental cost but also provide validation of experimental procedures.

1 April 2021 in Applied Surface Science
Verified
Journal Article
Closed access
SRSabra Rostami
Sabra Rostami
FPFatih Puza
Fatih Puza
MUMeltem Ucak
Meltem Ucak
EOErdogan Ozgur
Erdogan Ozgur
OGOzgur Gul
Ozgur Gul
BGBora Garipcan
Bora Garipcan