Stephen Archer

Stephen Archer


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 October 2018 in Environmental Science & Technology
Verified
Journal Article
Closed access
EEEgide EGIDE
Egide EGIDE
ENEdward Gou Nagato
Edward Gou Nagato
EBElias Bizuru
Elias Bizuru
KLKevin Lee
Kevin Lee
NTNing Tang
Ning Tang
DLDonnabella C. Lacap-Bugler
Donnabella C. Lacap-Bugler

EEEgide EGIDE
Egide EGIDE
SAStephen Archer
Stephen Archer
ENEdward Nagato
Edward Nagato
EBElias Bizuru
Elias Bizuru
KLKevin Lee
Kevin Lee
DLDonnabella Lacap-Bugler
Donnabella Lacap-Bugler
Aerosolized particulate matter (PM) is a complex mixture that has been recognized as the greatest cause of premature human mortality in low- and middle-income countries. Its toxicity arises largely from its chemical and biological components. These include polycyclic aromatic hydrocarbons (PAHs) and their nitro-derivatives (NPAHs) as well as microorganisms. In Africa, fossil fuel combustion and biomass burning in urban settings are the major sources of human exposure to PM, yet data on the role of aerosols in disease association in Africa remains scarce. This review is the first to examine studies conducted in Africa on both PAHs/NPAHs and airborne microorganisms associated with PM. These studies demonstrate that PM exposure in Africa exceeds World Health Organization (WHO) safety limits and carcinogenic PAHs/NPAHs and pathogenic microorganisms are the major components of PM aerosols. The health impacts of PAHs/NPAHs and airborne microbial loadings in PM are reviewed. This will be important for future epidemiological evaluations and may contribute to the development of effective management strategies to improve ambient air quality in the African continent.

10 June 2023 in Environmental Pollution
Verified
Journal Article
Closed access
ENEdward G. Nagato
Edward G. Nagato
HNHemanth Noothalapati
Hemanth Noothalapati
CKChihiro Kogumasaka
Chihiro Kogumasaka
SKSota Kakii
Sota Kakii
SHSarwar Hossain
Sarwar Hossain
SAStephen Archer
Stephen Archer

28 February 2024 in Science of The Total Environment
Verified
Journal Article
Open access
KLKevin Lee
Kevin Lee
SAStephen Archer
Stephen Archer
MKMayada K. Kansour
Mayada K. Kansour
DADina M. Al-Mailem
Dina M. Al-Mailem
Kuwaiti hypersaline soil samples were contaminated with 5 % (w/w) weathered Kuwaiti light crude oil and bioaugmented with autochthonous halophilic hydrocarbonoclastic archaeal and bacterial strains, two each, individually and as consortia. Residual oil contents were determined, and microbial communities were analyzed by culture-dependent and culture-independent approaches initially and seasonally for one year. After one year of the bioremediation process, the mean oil degradation rate was similar across all treated soils including the controlled unbioaugmented one. Oil hydrocarbons were drastically reduced in all soil samples with values ranging from 82.7 % to 93 %. During the bioremediation process, the number of culturable oil-degrading bacteria increased to a range of 142 to 344 CFUx104 g-1 after 12 months of bioaugmentation. Although culture-independent analysis showed a high proportion of inoculants initially, none could be cultured throughout the bioremediation procedure. Within a year, microbial communities changed continually, and 33 species of halotolerant/halophilic hydrocarbonoclastic bacteria were isolated and identified belonged mainly to the three major bacterial phyla Actinobacteria, Proteobacteria, and Firmicutes. The archaeal phylum Halobacterota represented <1 % of the microbial community's relative abundance, which explains why none of its members were cultured. Improving the biodegradability of an already balanced environment by autochthonous bioaugmentation is more involved than just adding the proper oil degraders. This study emphasizes the possibility of a relatively large resistant population, a greater diversity of oil-degrading microorganisms, and the highly selective impacts of oil contamination on hypersaline soil bacterial communities.

31 July 2023 in International Microbiology
Verified
Journal Article
Open access
PDF file
SLSiming Li
Siming Li
TYTim Young
Tim Young
SAStephen Archer
Stephen Archer
KLKevin Lee
Kevin Lee
AAAndrea Alfaro
Andrea Alfaro
Host gut microbiomes play an important role in animal health and resilience to conditions, such as malnutrition and starvation. These host-microbiome relationships are poorly understood in the marine mussel Perna canaliculus, which experiences significant variations in food quantity and quality in coastal areas. Prolonged starvation may be a contributory factor towards incidences of mass mortalities in farmed mussel populations, resulting in highly variable production costs and unreliable market supplies. Here, we examine the gut microbiota of P. canaliculus in response to starvation and subsequent re-feeding using high-throughput amplicon sequencing of the 16S rRNA gene. Mussels showed no change in bacterial species richness when subjected to a 14-day starvation, followed by re-feeding/recovery. However, beta bacteria diversity revealed significant shifts (PERMANOVA p-value < 0.001) in community structure in the starvation group and no differences in the subsequent recovery group (compared to the control group) once they were re-fed, highlighting their recovery capability and resilience. Phylum-level community profiles revealed an elevation in dominance of Proteobacteria (ANCOM-BC p-value <0.001) and Bacteroidota (ANCOM-BC p-value = 0.04) and lower relative abundance of Cyanobacteria (ANCOM-BC p-value = 0.01) in the starvation group compared to control and recovery groups. The most abundant genus-level shifts revealed relative increases of the heterotroph Halioglobus (p-value < 0.05) and lowered abundances of the autotroph Synechococcus CC9902 in the starvation group. Furthermore, a SparCC correlation network identified co-occurrence of a cluster of genera with elevated relative abundance in the starved mussels that were positively correlated with Synechococcus CC9902. The findings from this work provide the first insights into the effect of starvation on the resilience capacity of Perna canaliculus gut microbiota, which is of central importance to understanding the effect of food variation and limitation in farmed mussels.

28 January 2020 in Nature Microbiology
Verified
Journal Article
Closed access
PDF file
SAStephen Archer
Stephen Archer
SPStephen B. Pointing
Stephen B. Pointing