Sabina Tangaro

Prof. Sabina Tangaro

Istituto Nazionale di Fisica Nucleare, Sezione di Bari, Via E Orabona 4, I-70125 Bari, Italy.
orcid

Research Focus & Metrics

Academic Career Length

26Years (2001-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2015 in NeuroImage
Verified
Journal Article
Open access
EBEsther E. Bron
Esther E. Bron
MSMarion Smits
Marion Smits
WFWiesje M. van der Flier
Wiesje M. van der Flier
HVHugo Vrenken
Hugo Vrenken
FBFrederik Barkhof
Frederik Barkhof
SKStefan Klein
Stefan Klein
Algorithms for computer-aided diagnosis of dementia based on structural MRI have demonstrated high performance in the literature, but are difficult to compare as different data sets and methodology were used for evaluation. In addition, it is unclear how the algorithms would perform on previously unseen data, and thus, how they would perform in clinical practice when there is no real opportunity to adapt the algorithm to the data at hand. To address these comparability, generalizability and clinical applicability issues, we organized a grand challenge that aimed to objectively compare algorithms based on a clinically representative multi-center data set. Using clinical practice as the starting point, the goal was to reproduce the clinical diagnosis. Therefore, we evaluated algorithms for multi-class classification of three diagnostic groups: patients with probable Alzheimer's disease, patients with mild cognitive impairment and healthy controls. The diagnosis based on clinical criteria was used as reference standard, as it was the best available reference despite its known limitations. For evaluation, a previously unseen test set was used consisting of 354 T1-weighted MRI scans with the diagnoses blinded. Fifteen research teams participated with a total of 29 algorithms. The algorithms were trained on a small training set (n=30) and optionally on data from other sources (e.g., the Alzheimer's Disease Neuroimaging Initiative, the Australian Imaging Biomarkers and Lifestyle flagship study of aging). The best performing algorithm yielded an accuracy of 63.0% and an area under the receiver-operating-characteristic curve (AUC) of 78.8%. In general, the best performances were achieved using feature extraction based on voxel-based morphometry or a combination of features that included volume, cortical thickness, shape and intensity. The challenge is open for new submissions via the web-based framework: http://caddementia.grand-challenge.org.

1 December 2010 in Medical Image Analysis
Verified
Journal Article
Closed access
BGBram van Ginneken
Bram van Ginneken
SASamuel G. Armato
Samuel G. Armato
BHBartjan de Hoop
Bartjan de Hoop
SVSaskia van Amelsvoort-Van de Vorst
Saskia van Amelsvoort-Van de Vorst
TDThomas Duindam
Thomas Duindam
MPMathias Prokop
Mathias Prokop

1 August 2018 in Medical Image Analysis
Verified
Journal Article
Closed access
NANicola Amoroso
Nicola Amoroso
MRMarianna La Rocca
Marianna La Rocca
AMAlfonso Monaco
Alfonso Monaco
RBRoberto Bellotti
Roberto Bellotti
Sabina TangaroSabina Tangaro
Sabina Tangaro

1 May 2018 in Journal of Neuroscience Methods
Verified
Journal Article
Closed access
Nicola AmorosoNicola Amoroso
Nicola Amoroso
DDDomenico Diacono
Domenico Diacono
AFAnnarita Fanizzi
Annarita Fanizzi
MRMarianna La Rocca
Marianna La Rocca
Alfonso MonacoAlfonso Monaco
Alfonso Monaco
Sabina TangaroSabina Tangaro
Sabina Tangaro

11 April 2016 in Alzheimer's & Dementia
Verified
Journal Article
Open access
GAGenevera I. Allen
Genevera I. Allen
Nicola AmorosoNicola Amoroso
Nicola Amoroso
CACatalina Anghel
Catalina Anghel
VBVenkat Balagurusamy
Venkat Balagurusamy
CBChristopher J. Bare
Christopher J. Bare
AIAlzheimer'S Disease Neuroimaging Initiative
Alzheimer'S Disease Neuroimaging Initiative
Identifying accurate biomarkers of cognitive decline is essential for advancing early diagnosis and prevention therapies in Alzheimer's disease. The Alzheimer's disease DREAM Challenge was designed as a computational crowdsourced project to benchmark the current state‐of‐the‐art in predicting cognitive outcomes in Alzheimer's disease based on high dimensional, publicly available genetic and structural imaging data. This meta‐analysis failed to identify a meaningful predictor developed from either data modality, suggesting that alternate approaches should be considered for prediction of cognitive performance.

15 February 2024 in Frontiers in Microbiology
Verified
Journal Article
Open access
PDF file
PNPierfrancesco Novielli
Pierfrancesco Novielli
DRDonato Romano
Donato Romano
MMMichele Magarelli
Michele Magarelli
PBPierpaolo Di Bitonto
Pierpaolo Di Bitonto
DDDomenico Diacono
Domenico Diacono
\N\R\Npierfrancesco Novielli
\R\Npierfrancesco Novielli
Background: Colorectal cancer (CRC) is a type of tumor caused by the uncontrolled growth of cells in the mucosa lining the last part of the intestine. Emerging evidence underscores an association between CRC and gut microbiome dysbiosis. The high mortality rate of this cancer has made it necessary to develop new early diagnostic methods. Machine learning (ML) techniques can represent a solution to evaluate the interaction between intestinal microbiota and host physiology. Through explained artificial intelligence (XAI) it is possible to evaluate the individual contributions of microbial taxonomic markers for each subject. Our work also implements the Shapley Method Additive Explanations (SHAP) algorithm to identify for each subject which parameters are important in the context of CRC.Results: The proposed study aimed to implement an explainable artificial intelligence framework using both gut microbiota data and demographic information from subjects to classify a cohort of control subjects from those with CRC. Our analysis revealed an association between gut microbiota and this disease. We compared three machine learning algorithms, and the Random Forest (RF) algorithm emerged as the best classifier, with a precision of 0.729 ± 0.038 and an area under the Precision-Recall curve of 0.668 ± 0.016. Additionally, SHAP analysis highlighted the most crucial variables in the model's decision-making, facilitating the identification of specific bacteria linked to CRC. Our results confirmed the role of certain bacteria, such as Fusobacterium, Peptostreptococcus, and Parvimonas, whose abundance appears notably associated with the disease, as well as bacteria whose presence is linked to a non-diseased state.Discussion: These findings emphasizes the potential of leveraging gut microbiota data within an explainable AI framework for CRC classification. The significant association observed aligns with existing knowledge. The precision exhibited by the RF algorithm reinforces its suitability for such classification tasks. The SHAP analysis not only enhanced interpretability but identified specific bacteria crucial in CRC determination. This approach opens avenues for targeted interventions based on microbial signatures. Further exploration is warranted to deepen our understanding of the intricate interplay between microbiota and health, providing insights for refined diagnostic and therapeutic strategies.