Yi Yu

Dr. Yi Yu


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 February 2019 in Entropy
Verified
Journal Article
Open access
PDF file
CWChang Wang
Chang Wang
ZZZongya Zhao
Zongya Zhao
QRQiongqiong Ren
Qiongqiong Ren
YXyongtao Xu
yongtao Xu
YYYi Yu
Yi Yu
Various retinal vessel segmentation methods based on convolutional neural networks were proposed recently, and Dense U-net as a new semantic segmentation network was successfully applied to scene segmentation. Retinal vessel is tiny, and the features of retinal vessel can be learned effectively by the patch-based learning strategy. In this study, we proposed a new retinal vessel segmentation framework based on Dense U-net and the patch-based learning strategy. In the process of training, training patches were obtained by random extraction strategy, Dense U-net was adopted as a training network, and random transformation was used as a data augmentation strategy. In the process of testing, test images were divided into image patches, test patches were predicted by training model, and the segmentation result can be reconstructed by overlapping-patches sequential reconstruction strategy. This proposed method was applied to public datasets DRIVE and STARE, and retinal vessel segmentation was performed. Sensitivity (Se), specificity (Sp), accuracy (Acc), and area under each curve (AUC) were adopted as evaluation metrics to verify the effectiveness of proposed method. Compared with state-of-the-art methods including the unsupervised, supervised, and convolutional neural network (CNN) methods, the result demonstrated that our approach is competitive in these evaluation metrics. This method can obtain a better segmentation result than specialists, and has clinical application value.

15 September 2022 in Journal of Neural Engineering
Verified
Journal Article
Closed access
PDF file
ZZZongya Zhao
Zongya Zhao
YNYanxiang Niu
Yanxiang Niu
XZXiaofeng Zhao
Xiaofeng Zhao
YZYu Zhu
Yu Zhu
ZSZhenpeng Shao
Zhenpeng Shao
YYYi Yu
Yi Yu
A growing number of studies have revealed significant abnormalities in electroencephalography (EEG) microstate in patients with depression, but these findings may be affected by medication. Therefore, how the EEG microstates abnormally change in patients with depression in the early stage and without the influence of medication has not been investigated so far. Resting-state EEG data and Hamilton Depression Rating Scale (HDRS) were collected from 34 first-episode drug-naïve adolescent with depression and 34 matched healthy controls. EEG microstate analysis was applied and nonlinear characteristics of EEG microstate sequences were studied by sample entropy and Lempel–Ziv complexity (LZC). The microstate temporal parameters and complexity were tried to train an SVM for classification of patients with depression. Four typical EEG microstate topographies were obtained in both groups, but microstate C topography was significantly abnormal in depression patients. The duration of microstate B, C, D and the occurrence and coverage of microstate B significantly increased, the occurrence and coverage of microstate A, C reduced significantly in depression group. Sample entropy and LZC in the depression group were abnormally increased and were negatively correlated with HDRS. When the combination of EEG microstate temporal parameters and complexity of microstate sequence was used to classify patients with depression from healthy controls, a classification accuracy of 90.9% was obtained. Abnormal EEG microstate has appeared in early depression, reflecting an underlying abnormality in configuring neural resources and transitions between distinct brain network states. EEG microstate can be used as a neurophysiological biomarker for early auxiliary diagnosis of depression.

3 June 2021 in Frontiers in Neuroscience
Verified
Journal Article
Open access
PDF file
ZZZongya Zhao
Zongya Zhao
JLJun Li
Jun Li
YNYanxiang Niu
Yanxiang Niu
CWChang Wang
Chang Wang
JZJunqiang Zhao
Junqiang Zhao
YYYi Yu
Yi Yu
At present, lots of studies have tried to apply machine learning to different electroencephalography (EEG) measures for diagnosing schizophrenia (SZ) patients. However, most EEG measures previously used are either a univariate measure or a single type of brain connectivity, which may not fully capture the abnormal brain changes of SZ patients. In this paper, event-related potentials were collected from 45 SZ patients and 30 healthy controls (HCs) during a learning task, and then a combination of partial directed coherence (PDC) effective and phase lag index (PLI) functional connectivity were used as features to train a support vector machine classifier with leave-one-out cross-validation for classification of SZ from HCs. Our results indicated that an excellent classification performance (accuracy = 95.16%, specificity = 94.44%, and sensitivity = 96.15%) was obtained when the combination of functional and effective connectivity features was used, and the corresponding optimal feature number was 15, which included 12 PDC and three PLI connectivity features. The selected effective connectivity features were mainly located between the frontal/temporal/central and visual/parietal lobes, and the selected functional connectivity features were mainly located between the frontal/temporal and visual cortexes of the right hemisphere. In addition, most of the selected effective connectivity abnormally enhanced in SZ patients compared with HCs, whereas all the selected functional connectivity features decreased in SZ patients. The above results showed that our proposed method has great potential to become a tool for the auxiliary diagnosis of SZ.

10 September 2024 in Journal of Affective Disorders
Verified
Journal Article
Closed access
ZZZongya Zhao
Zongya Zhao
XRXiangying Ran
Xiangying Ran
JWJunming Wang
Junming Wang
SLShiyang Lv
Shiyang Lv
MQMengyue Qiu
Mengyue Qiu
YYYi Yu
Yi Yu

4 December 2024 in BMC Psychiatry
Verified
Journal Article
Open access
PDF file
HRHuicong Ren
Huicong Ren
XRXiangying Ran
Xiangying Ran
MQMengyue Qiu
Mengyue Qiu
SLShiyang Lv
Shiyang Lv
JWJunming Wang
Junming Wang
ZZZongya Zhao
Zongya Zhao
At present, only a few studies have explored electroencephalography (EEG) microstates of patients with obsessive–compulsive disorder (OCD) and the results are inconsistent. Additionally, the nonlinear features of EEG microstate sequences contain rich information about the brain, yet how the nonlinear features of EEG microstate sequences abnormally change in patients with OCD is still unknown. Resting-state EEG data were collected from 48 OCD patients and macheted 48 healthy controls (HC). Subsequently, EEG microstate analysis was used to extract the microstate temporal parameters (duration, occurrence, coverage) and nonlinear features of EEG microstate sequences (sample entropy, Lempel–Ziv complexity, Hurst index). Finally, the temporal parameters and nonlinear features of EEG microstate sequences were sent to three kinds of machine learning models to classify OCD patients. Both groups obtained four typical EEG microstate topographies. The duration of microstates A, B, and C in OCD patients decreased significantly, while the occurrence of microstate D increased significantly compared to HC. Sample entropy and Lempel–Ziv complexity of microstate sequences in OCD patients increased significantly, while Hurst index decreased significantly compared to HC. The classification accuracy using the nonlinear features of microstate sequences reached up to 85%, significantly higher than that based on microstate temporal parameter models. This study provides supplementary findings on EEG microstates in OCD patients with a larger sample size. We found that the nonlinear features of EEG microstate sequences in OCD patients can serve as potential electrophysiological biomarkers for distinguishing OCD patients.

10 June 2022 in Frontiers in Oncology
Verified
Journal Article
Open access
CWChong Wang
Chong Wang
XWXiu-Li Wei
Xiu-Li Wei
CLChen-Xi Li
Chen-Xi Li
YWYang-Zhen Wang
Yang-Zhen Wang
YWYang Wu
Yang Wu
YYYi Yu
Yi Yu
Hematopoietic disorders are serious diseases that threaten human health, and the diagnosis of these diseases is essential for treatment. However, traditional diagnosis methods rely on manual operation, which is time consuming and laborious, and examining entire slide is challenging. In this study, we developed a weakly supervised deep learning method for diagnosing malignant hematological diseases requiring only slide-level labels. The method improves efficiency by converting whole-slide image (WSI) patches into low-dimensional feature representations. Then the patch-level features of each WSI are aggregated into slide-level representations by an attention-based network. The model provides final diagnostic predictions based on these slide-level representations. By applying the proposed model to our collection of bone marrow WSIs at different magnifications, we found that an area under the receiver operating characteristic curve of 0.966 on an independent test set can be obtained at 10× magnification. Moreover, the performance on microscopy images can achieve an average accuracy of 94.2% on two publicly available datasets. In conclusion, we have developed a novel method that can achieve fast and accurate diagnosis in different scenarios of hematological disorders.