The rapid mapping and characterization of specific porphyry vein types in geological samples represent a challenge for the mineral exploration and mining industry. In this paper, a methodology to integrate mineralogical and structural data extracted from hyperspectral drill-core scans is proposed. The workflow allows for the identification of vein types based on minerals having significant absorption features in the short-wave infrared. The method not only targets alteration halos of known compositions but also allows for the identification of any vein-like structure. The results consist of vein distribution maps, quantified vein abundances, and their azimuths. Three drill-cores from the Bolcana porphyry system hosting veins of variable density, composition, orientation, and thickness are analysed for this purpose. The results are validated using high-resolution scanning electron microscopy-based mineral mapping techniques. We demonstrate that the use of hyperspectral scanning allows for faster, non-invasive and more efficient drill-core mapping, providing a useful tool for complementing core-logging performed by on-site geologists.